Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01982 ATGGCTGAGTCAGACAACGAGTCAGGAGGTCAACCCGGCAACGCAAGCAACGAGTTCTCGGGTTGCAGAGAGCAAGACAGGTTCCTCCCCATAGCAAACGTGAGCAGGATCATGAAGAAGGCGTTACCGGCGAACGCCAAGATCTCGAAGGAAGCCAAAGAGACTGTGCAAGAGTGTGTATCGGAGTTCATCAGCTTCATCACAGGTGAAGCCTCCGATAAGTGTCAGAAAGAGAAGAGAAAGACCATCAACGGCGATGATCTTCTGTGGGCCATGACCACACTGGGGTTTGAGGAGTACGTGGAGCCTCTCAAGATTTACCTCCACAAGTATAGGGAGATGGAGGGTGAGAAAACTGCTATGATGGGAAGGCCACAAGGTGAGAGGGAAGatggttatgctcatggtcatggccatggtcatggtcatggccatgctcatggGGGTGTGGTGCCATCCCCCATGATGATGATGGTGGGGCATCAGCAGCATCAAGGCCACGTGTATGGATCTGGGACTGGATCATCAAGAACCAGATAG 540 0.4741 MAESDNESGGQPGNASNEFSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGEKTAMMGRPQGEREDGYAHGHGHGHGHGHAHGGVVPSPMMMMVGHQQHQGHVYGSGTGSSRTR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01982 179 Gene3D Histone, subunit A 16 135 IPR009072 GO:0046982
Cca08g01982 179 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cca08g01982 179 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 168 - -
Cca08g01982 179 MobiDBLite consensus disorder prediction 1 21 - -
Cca08g01982 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Cca08g01982 179 MobiDBLite consensus disorder prediction 1 22 - -
Cca08g01982 179 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Cca08g01982 179 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Cca08g01982 179 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Cca08g01982 179 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 168 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca08g01982 179 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01982 Cca-Chr8 52590740 52592268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01982 1 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.818 3.61e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca08g01982 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01982 K08065 - gmx:100778034 271.937