Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01974 ATGTCTACCACCTTGCACCATTTAGATGAAGGTGTGTCTGTGGAGGACAACTACTATGGCAGAAGCAGCAGCGTGAGTGAGATAGAGGAAGAGAATTCTTCACACTTGCACTTGAATAATGATGCTTCTAATCCTATGGTTACCATTAGTGAAGAAGAGAACCAAGGGGAAGAAGACATGATTTATGTGGCAGTTGGTAAGAGCCAGAGTAGCATGGAAGCCTTGTCATGGACCCTTAACAATTTGGCCACTCCATCTACCACCATGCTCTATCTCATACATGTTTTCCCAGAGATCAAGCTCCTTCCAAATCCATTGGGAGTGGGAATGATTCCAAAGGACCAAGTGAGTCCTGAGCAAGTAGAGAGCTACATGGCCCAAGAAAGAGGCAAAAGGAGAGAGCTTCTATACAAATACCTCCAACTATGCTCTGCTTCCAAGGTTAAGGTGGACACCATCCTGATTGAGAGTGACTTGATTGCAAAGGCTATAATGGATCTCATTCCAATTCTTCAAATAAGAAAACTAGTTATTGGAGCCAGTAAATCACAATTAAGAAAATTGAGATCAAGGAAAGGGAGTAGCATAGCTGATCAGATACTTCAGAATGCTCCAGAAAGTTGCAAGGTGAGCATTGTATGTGAAGGAAAGGAAGTAAATGAACAGATAACTCGTGTCATTGCTAATGATACTTCCATGTCCCAGAAAAACAAGCATCAGCAAAATGGTTCGGTTTCTTGTGTTTGTTTTAACTTTTAA 759 0.415 MSTTLHHLDEGVSVEDNYYGRSSSVSEIEEENSSHLHLNNDASNPMVTISEEENQGEEDMIYVAVGKSQSSMEALSWTLNNLATPSTTMLYLIHVFPEIKLLPNPLGVGMIPKDQVSPEQVESYMAQERGKRRELLYKYLQLCSASKVKVDTILIESDLIAKAIMDLIPILQIRKLVIGASKSQLRKLRSRKGSSIADQILQNAPESCKVSIVCEGKEVNEQITRVIANDTSMSQKNKHQQNGSVSCVCFNF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01974 252 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 9 251 - -
Cca08g01974 252 CDD STK_N 61 216 - -
Cca08g01974 252 Gene3D HUPs 47 224 IPR014729 -
Cca08g01974 252 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 61 210 - -
Cca08g01974 252 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 9 251 - -
Cca08g01974 252 Pfam Universal stress protein family 61 206 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01974 Cca-Chr8 52488572 52490418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01974 64 232 Plant U-box Gene Family AT5G57035 28.994 1.47e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01974 - - gmx:100781056 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g03007 11 57262358 57264358 Cca08g01974 08 52488572 52490418 PCT