Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01973 ATGTCAATCAAGATGTCAGATGAAACGAGGCATGATTGTTTGCACTACGATTGCAATGAAGAAACCTTTAATTGTTCTTGTGGTTTCATCGGATTCAGGAGAAACCAAGTGTTTGACTTTGATTGCAACACCAACGACGAGGATTCGGAGGAGTTGTTTGAGATCAATCTTAAGGAGCCATTGGATACAATATCTGAAGACTGCGAGAGCAGTGTGTTCTCTTTCGATATTCACAACAACGAAAAAGATGTTGTTCATGTGGCAGTGGACCACGTTGGAGAATCAAGCATGGAAGCACTTTTATGGACTTTGAAACATGCTGTCACACCCTCTACCACTGTCTCTCTCATACATGTTTTTCCTCAAATCAGGTTCATCCCAAGTCCATTTGGAAAATTTCCAAGGAATCGTGTAAATCCAGGGTATGTTAACTATTTCTTGACTCAACACAAAGGCAAAACGAAACTGCTCCTTCAAAAGTTTATTGACTTGTGCCTTGATTCAAAGGTTAAGGTGGAAATAATGCTTATTGAAGATGACAACGTTGCCAAAGCTATAACGGACCTTGTTAGAGATCATGGTGTAAGGAAATTGGTGATAGGAATTACCAAATCCAATTTAAGCAAATGTGTCTCTAGATGGGGAAATGGAATAGCAGATAATGTCCTCAAGAATGCACCAGAAATCTGTGATATTAAAATAATATGTGATGGAAAGGAAGTGATTGATCAGATGATTAGTTGCACTATATCAGGCTCCGATGACAGCAACAGTTCAAGTGTTTCACAACAAGAATATGAATCCCATGCTGTGGTTCCTCTTATGCGTTTTGTGCCCAATCCTATATGGTTGTTTAGACCAAAATTTTAA 870 0.3885 MSIKMSDETRHDCLHYDCNEETFNCSCGFIGFRRNQVFDFDCNTNDEDSEELFEINLKEPLDTISEDCESSVFSFDIHNNEKDVVHVAVDHVGESSMEALLWTLKHAVTPSTTVSLIHVFPQIRFIPSPFGKFPRNRVNPGYVNYFLTQHKGKTKLLLQKFIDLCLDSKVKVEIMLIEDDNVAKAITDLVRDHGVRKLVIGITKSNLSKCVSRWGNGIADNVLKNAPEICDIKIICDGKEVIDQMISCTISGSDDSNSSSVSQQEYESHAVVPLMRFVPNPIWLFRPKF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01973 289 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 16 286 - -
Cca08g01973 289 Gene3D HUPs 75 234 IPR014729 -
Cca08g01973 289 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 92 206 - -
Cca08g01973 289 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 16 286 - -
Cca08g01973 289 CDD STK_N 93 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01973 Cca-Chr8 52480924 52483201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01973 85 238 U-box Gene Family AT2G45910 29.677 6.06e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01973 - - gmx:100818837 434.876