Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01972 ATGGACTCAAAAACTAGTTCTAGAGCTCTCCCTAAACACCATCAGAAGACGGCCGGGATTCAAACCCTTGAGGTGAAAGACGCCAGCTCTTCGTCGCTGAAGACGGCGAAGACTGAGCTGGCTGCTCCTGAGGATTTATCGAAGTCCAAGCAGAATATTGGGGAAACTGCTGAAACCAAGAAGTTAGGGGTTTCAGTCCAAAAGGGGTCTGCTGATTCCTTGAGCAATAAAAGTGGTTCTGGTGCTTCCTCATCTGTTCTCGACAATGTGGATCCTGCTGCTAAGGAGAACATAGGCTCACAGGAAAGCGCAATTGATCAAGACAAGAAGGCGTTGGAATATGGAAGTGTGAAGAACAGTTCTGTTTCTGCCAAAGTTAGTGATGGGGCCAGCAGTCTTGCAAAGACAAGTGGAAGTGCCAAGATCAGTGACCGGGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTGCAGAGGAAGCACAAGCAGTGATGTGAGTGATGAAAGTACTTGTAGTAGCTTTAGTAGCAGCATAAACAAGCCTCACAAGGCAAATGACTTGAGATGGGAAGCTATCCAATTAGTTCGAAGTAAAGATGGGGTGTTGGGGTTAGGTCACTTTAGGCTACTGAAGAGGCTGGGTTGTGGAGATATTGGAAGTGTATATCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTAATGGACAAAGGGTCCCTAGCAAGTCGCAAAAAGCTACTTCGAGCTCAGACAGAACGGGAAATTCTGCAGTCTCTTGACCACCCTTTTCTCCCAACTTTGTACACCCATTTTGAGACAGAGAAATTTTCATGCTTGGTGATGGAATTCTGCCCCGGCGGAGATCTCCATACTCTTAGGCAGAAGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTCTATGTGGCGGAGGTTCTACTGGCTTTGGAGTACCTCCACATGCTTGGAATTGTCTACCGTGACCTTAAGCCGGAAAATGTCCTTGTTAGGGACGATGGACACATTATGCTCTCTGACTTTGACCTCTCCCTCCGATGTGCTGTTAGTCCGACCCTTGTTAAAACCTCATCCATGGATTCTGAGCCTTTAAGAAAGAATCCTGTGTACTGTGTCCAACCTGCATGCATTGAGCCACCTTCCTGCATCCAGCCATCCTGTGTTGCTCCTACTACATGCTTTTCACCACGCCTCTTCTCCAGCAAATCAAAGAAGGAGCGCAAGCCCAAAACTGAAATCGGCAACCAAGTGAGTCCGTTACCTGAGCTCATCGCTGAGCCTACTGATGCTCGGTCCATGTCATTTGTTGGAACTCACGAGTACTTGGCACCTGAGATCATCAAGGGTGAAGGCCACGGGAGTGCTGTGGATTGGTGGACTTTTGGGATCTTTTTATACGAGCTGTTGTTTGGTAAAACTCCTTTCAAGGGATCCGGCAACCGAGCAACATTGTTCAATGTTGTAGGCCAGCCACTGCGATTTCCCGAAGCACCTGTTGTCAGTTTTGCAGCAAGGGATCTCATAAGGGGTTTGCTTGTGAAGGAACCACAGCACAGATTGGCATATAAAAGAGGTGCTACTGAGATTAAGCAACACCCCTTTTTTGAAGGTGTGAATTGGGCGCTGATCCGTTGTGCCACCCCTCCTGAGATCCCAAAGGCTGTGGAGTTTGAGAAGATACCCTCCCCAGCCTCATCAGGTGGTGAAAAAGCTGTTAACCATCACATGTCAATAGCTAATCAGAAAGGTGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1815 0.4711 MDSKTSSRALPKHHQKTAGIQTLEVKDASSSSLKTAKTELAAPEDLSKSKQNIGETAETKKLGVSVQKGSADSLSNKSGSGASSSVLDNVDPAAKENIGSQESAIDQDKKALEYGSVKNSSVSAKVSDGASSLAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQLVRSKDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSMDSEPLRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKERKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPASSGGEKAVNHHMSIANQKGGSDNYLEFDFF 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01972 604 ProSiteProfiles Protein kinase domain profile. 207 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01972 604 CDD STKc_phototropin_like 206 563 - -
Cca08g01972 604 PANTHER FLIPPASE KINASE 1-RELATED 3 604 - -
Cca08g01972 604 MobiDBLite consensus disorder prediction 1 105 - -
Cca08g01972 604 MobiDBLite consensus disorder prediction 22 37 - -
Cca08g01972 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 328 340 IPR008271 GO:0004672|GO:0006468
Cca08g01972 604 MobiDBLite consensus disorder prediction 66 87 - -
Cca08g01972 604 Gene3D Transferase(Phosphotransferase) domain 1 439 563 - -
Cca08g01972 604 SUPERFAMILY Protein kinase-like (PK-like) 182 565 IPR011009 -
Cca08g01972 604 Gene3D Phosphorylase Kinase; domain 1 205 290 - -
Cca08g01972 604 Pfam Protein kinase domain 208 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01972 604 Pfam Protein kinase domain 442 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01972 604 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 3 604 - -
Cca08g01972 604 SMART serkin_6 207 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01972 604 Gene3D Transferase(Phosphotransferase) domain 1 291 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01972 Cca-Chr8 52472424 52476898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01972 36 604 AGC Kinase Gene Family AT5G47750 76.923 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca08g01972 Pkinase 1.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01972 K08286 - gmx:100781600 1073.92