Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01951 ATGTACCCGAGGTTGATACACCCCCACGATGCGATTGTGCCGCAGGAAGACATGCACGCTGCTGCTTCGAACCTCTCTCACGCTCACAAGGGAGACCCTTGTCTCGTTCTCACCGCTGATCCAAAGCCTCGCCTTCGATGGACTCAGGACCTCCATGAACGCTTCGTTGATGCCGTCACCCAGCTTGGGGGTGCCAGCAAAGCTACACCTAAAGCAATCATGCGGACCATGAATGTCAAGGGTTTGACATTATTTCATTTGAAGAGTCATCTTCAGAAATACAGACTTGGTAAGCAATCTGGGAAAGACGTGGGTGAAGGATGCAAAGATGATGTTTCTATGGATTTGAATTACCAAATTGAGGGAGTGATTGGTTGTATGGCTAGGGGTTATGAAATCAAGGAGGCTTTGAGAGCACAGATGGAAGTGCAGAGTAAATTACATTTGCAAGTGGAGGCAGAGAAGCACTTACAGATTCGCCAGGATGCAGAGAGGAGGTACATGGCCATGCTTGAAAGAGCTTGCAAGATGCTTGCTGATCAATTTATTGGCGCTACCGTTATAGACACAGACAGCCAAAAATTTCAAGGAATTGGAAGCAAAGCACCTAGAGGTACTTTGGTTGATCCTCTTGGCTTTTACTCCTTGCCATCTGCTGAGGTGGCCGGGGTGAATGTACCGGAAGAAGAAATACCACCTACTATCCCACCCCAAAGGGCTGATTGTTCAACTGAAAGTTGCTTAACCTCACATGAGAGTTCTGGAGGATTGGCTTTAGAAGGATCTCCAGGTGGGGGGAAAAGGAGGATGCTTGGCATGGACTCTATGGCAGCACCTTTGATCTGGAGTGAAGCTAAGATGAGAACTCAAGCCATCAATGTAGTAGCCCAAGGTAATCATCCTCAAGGAATAACTAGGTATGGCATGTAG 930 0.4763 MYPRLIHPHDAIVPQEDMHAAASNLSHAHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDVGEGCKDDVSMDLNYQIEGVIGCMARGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIGSKAPRGTLVDPLGFYSLPSAEVAGVNVPEEEIPPTIPPQRADCSTESCLTSHESSGGLALEGSPGGGKRRMLGMDSMAAPLIWSEAKMRTQAINVVAQGNHPQGITRYGM 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01951 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Cca08g01951 309 MobiDBLite consensus disorder prediction 230 269 - -
Cca08g01951 309 MobiDBLite consensus disorder prediction 239 256 - -
Cca08g01951 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 309 IPR044848 GO:0003700
Cca08g01951 309 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Cca08g01951 309 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Cca08g01951 309 Pfam MYB-CC type transfactor, LHEQLE motif 132 177 IPR025756 -
Cca08g01951 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Cca08g01951 309 Gene3D - 41 99 - -
Cca08g01951 309 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01951 Cca-Chr8 52207435 52212726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01951 31 250 G2-like Transcription Factor Family AT3G24120 45.798 1.17e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca08g01951 Myb_DNA-binding 5.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01951 - - gmx:100786397 518.079