Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01950 ATGTATCATTCAAAGAATGTTGTTCCTAGTGCAAGTTTAATTGGAGGTAATTCATTAGTTCATGGTCAGCACATAGATTGTGGTGGAAGCACAATGGATCCTGGCAGTGGAGGAAACAGTCTTAGCAACAACTCTAATCTCACCTCAAAACAACGTTTACGGTGGACGCATGAATTACATGAGCGCTTTGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGCGTACAAGGCTTGACCATTTACCATGTCAAAAGCCATTTACAGAAATACCGACTAGCAAAATATTTACCCGACTCCTCATCTGATGAAGGGAAAAAGACCGACAAGAAAGAAACAGGGGATATGCTTTCCAATCTTGATGCTTCAGGTGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTTCAGAAGCGACTACATGAACAATTGGAGGTGCAAAGACAGCTACAATTGCGGATAGAAGCGCAGGGTAAATACCTGAAAAAGATAATTGAAGAGCAACAGCGGCTCAGTGGTGTTCTCTCAGATGCACCTGGCTCTGGGGTTACAGCCTTTGTTCCAGGGGATGCATGCCAAGAACCTGATGATAAGACCGACCCATCAACCCCCGACCCTGAAAAGGCTGCCAAAGACCGTGCCCCGGCCAAGAGTCTTTCGATCGAATCTTTTTCATCACACCATGAACCAATGACCCCAGATTCTGGTTGCCATGTTGGTTCCCCTGTTGACAGCCCTAAAGGGGAGAGATCGGCCAAGAAGCTACGAGTTGGCATCGAGGGAGCGTATTCTAAACCAGATATGGTGCTTCCACATCAGATACTGGAGTCAAGCTTGTCATCATATCCGCAACCTAACACTGTATTCCTTGGCCAAGAGCAATTTGATCCTTCTTTGGGTATATCTACCAGAAGTGGTGAGGAAATGGAGAAGGTCGGTGGCAGTAATCTGTGA 993 0.4653 MYHSKNVVPSASLIGGNSLVHGQHIDCGGSTMDPGSGGNSLSNNSNLTSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKTDKKETGDMLSNLDASGGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSDAPGSGVTAFVPGDACQEPDDKTDPSTPDPEKAAKDRAPAKSLSIESFSSHHEPMTPDSGCHVGSPVDSPKGERSAKKLRVGIEGAYSKPDMVLPHQILESSLSSYPQPNTVFLGQEQFDPSLGISTRSGEEMEKVGGSNL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01950 330 MobiDBLite consensus disorder prediction 188 265 - -
Cca08g01950 330 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677
Cca08g01950 330 MobiDBLite consensus disorder prediction 308 330 - -
Cca08g01950 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 5 322 IPR044848 GO:0003700
Cca08g01950 330 Pfam MYB-CC type transfactor, LHEQLE motif 137 183 IPR025756 -
Cca08g01950 330 MobiDBLite consensus disorder prediction 109 129 - -
Cca08g01950 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 5 322 - -
Cca08g01950 330 MobiDBLite consensus disorder prediction 109 127 - -
Cca08g01950 330 Coils Coil 140 160 - -
Cca08g01950 330 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Cca08g01950 330 Gene3D - 49 108 - -
Cca08g01950 330 MobiDBLite consensus disorder prediction 206 228 - -
Cca08g01950 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 107 IPR017930 -
Cca08g01950 330 Pfam Myb-like DNA-binding domain 53 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01950 Cca-Chr8 52196952 52201761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01950 85 330 G2-like Transcription Factor Family AT2G01060 60.227 5.38e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca08g01950 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01950 - - gmx:100786925 575.474