Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01942 ATGGCCTCCGACAGCGAAATTTCCCCCGCCGTCGCTCGCAAGGCTCCCGGCAAGGAGCAACAAGCCGCCGGCGTCGGAATACTCCTCCAGATCATGATGCTCGTGCTTTCCTTCGTCCTCGGCCACGTTCTCCGCCGGAAGAAGGTTTACATCATCCCCGAAGCAAGTGCTTCGCTCCTCATAGGGTTAATTGTTGGTATACTAGCTAACATTTCCGACACCGAAACTAGTATCAGGGCGTGGTTCAATTTTCACGAGGAGTTTTTCTTCCTGTTCCTGCTACCTCCGATCATATTTCAGTCTGGGTTCAGTCTCGCACCCAAACCCTTTTTCTCAAATTTTGGAGCAATTGTCACATTTGCTATATTCGGTACCTTTATAGCTTCAATTGTAACGGGTATCTTGGTCTATCTTGGTGGCTTGCTCTTTCTAATGTATAGGCTACCATTCGTTGAGTGCCTGATGTTTGGTGCTCTTATATCAGCTACTGATCCTGTTACTGTTTTGTCCATATTTCAGGAGCTGGGCACAGATGTCAATCTATATGCCTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCAATCTCTTTGTACAGGACAATGTCATTGGTTAAAGCTCATCCATCTGGACAAAATTTACTCATGGTGGTAGTTCGATTTTTGGAGACTTTTGTTGGGTCAATGTCTGCAGGTTTTGGAGTTGGATTTATCTCTGCTTTGCTATTTAAGTATGCAGGATTGGATATTGACAACCTTCAGAACTTGGAGAGTTGTCTTTTTGTCCTTTTCCCATATTTCTCGTACATGCTTGCTGAAGGCCTTGGTCTGTCTGGTATTGTATCAATACTGTTCACGGGAATAGTCATGAAGCATTACACGTATTCCAATTTGTCACAAAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCTTTAGCTGAAACATTTGTATTTATATACATGGGCTTTGATATTGCTATGGAGCAACATAGCTGGTCACACGTTGGATTTATATTCTTCTCCATTATATTCATTGGAATAGCAAGGGCAGCAAATGTCTTTTCTTGTGCTTATTTGGTCAATTTGGTCAGACCTGCTCATCGAAAGATACCTCGAAAACATCAGAAGGCACTCTGGTATAGTGGACTTCGAGGAGCAATGGCTTTTGCGCTTGCTCTGCAATCAATTCATGATCTTCCAGAAGGACATGGACAGACTATCTTTACCGCTACTACTGCAATAGTTGTTTTGACAGTATTGCTGATTGGTGGTTCAACCGGTACCATGCTGGAAGCTCTAGATGTTGTAGGTGGAGACAGTCATAACGATAGCCCTTTGGCTTCAATTGGTACCATCACAAATTTTGATGACAACAATGGTTATATTGCTCCACCTTACAATGAAGAATCATCTTCAGGGAACAAAATCAAGATGAAGCTAAAAGAATTCCATAAGAGTGCTGCATCTTTTTCGGCATTAGATAAAAACTACCTAACCCCATTCTTTACAAGTCAAAATGGAGATGAAGATGATGAAGCCGAGCCTTTTACTTCTACAAGATCGGGATTTCATGGCCATAACCCCTATTCATCATGA 1611 0.4209 MASDSEISPAVARKAPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKVYIIPEASASLLIGLIVGILANISDTETSIRAWFNFHEEFFFLFLLPPIIFQSGFSLAPKPFFSNFGAIVTFAIFGTFIASIVTGILVYLGGLLFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVKAHPSGQNLLMVVVRFLETFVGSMSAGFGVGFISALLFKYAGLDIDNLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKHYTYSNLSQSSQRFVSAFFELISSLAETFVFIYMGFDIAMEQHSWSHVGFIFFSIIFIGIARAANVFSCAYLVNLVRPAHRKIPRKHQKALWYSGLRGAMAFALALQSIHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALDVVGGDSHNDSPLASIGTITNFDDNNGYIAPPYNEESSSGNKIKMKLKEFHKSAASFSALDKNYLTPFFTSQNGDEDDEAEPFTSTRSGFHGHNPYSS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01942 536 Pfam Sodium/hydrogen exchanger family 33 436 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca08g01942 536 Gene3D - 150 201 - -
Cca08g01942 536 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca08g01942 536 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca08g01942 536 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca08g01942 536 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca08g01942 536 PANTHER SODIUM/HYDROGEN EXCHANGER 12 519 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cca08g01942 536 MobiDBLite consensus disorder prediction 506 536 - -
Cca08g01942 536 PANTHER SODIUM/HYDROGEN EXCHANGER 6 12 519 - -
Cca08g01942 536 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 31 447 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01942 Cca-Chr8 52121422 52129820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01942 19 438 Antiporters AT3G05030 33.937 3.15e-52 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01942 K14724 - gmx:100790830 944.88