Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01933 ATGGATGAAAGAATTCTAGTATTCCTACTAATCATTCTCACTCATTTGTTGATTGTACTAGCAAATACAGCAAATCAGGATTACACTGCTCTGCTGGCTCTACAGAATGAATGGCATAACACACCACCTAATTGGGTGGGTTCAGATCCTTGTGGAGGTTGGGATGGCATTGAGTGTTCCAATTCACGGATTATCTCCATATCATTAGCAAGCATGGATTTGTCTGGCCAGCTTACTTCAGATATTGGATTACTTACTGAACTGCAGATTTTGGATCTGTCTTACAATAAGAATTTAACCGGACCACTTCCCAATGACATTGGAAACTTGAGAAAGCTGAGAAACTTACTTCTTATTAGTTGTGGTTTCTCTGGTCCTATCCCAGATACAATTGGAAATTTAGAACGGCTTGTCTTCCTATCTTTAAATTCTAACGGCTTCAGTGGTCAAATTCCAGCTGCCATTGGTAATCTCTCAAATGTTTATTGGCTAGACTTAGCAGAAAACCAGCTTGAAGGGTCCATCCCCATATCTAATGGAACTACTCCTGGTCTTGATATGATGCACCATACAAAGCACTTTCATTTTGGGAAGAATAAGCTTTCAGGAAACATTCCTTCTGAACTTTTTAGCCCCGAAATGACTCTAATACACGTGCTTTTTGAGTCCAACCAATTTACTGGTAGCATTCCATCTACGCTTGGGCTAGTCAAGCCTCTGGAGGTGGTGCGTTTTGATGGTAACTTTTTAAGTGGACCTTTGCCTTCAAACATCAACAATCTTACAAATGTTAGGGAATTGTTCCTGTCCAACAATCGCCTGTCTGGTTCCCTGCCAAACCTTACTGGAATGAATTTCCTCAGTTACCTGGATATGAGCAATAATAGTTTTGATCCATCAGAGTTACCACCGTGGTTGTCAACTCTTCCAACTCTGACAACAATAATGATGGAGAATACAAAACTTCAAGGACATATTCCAGTTTCTTTGTTCGGTCAGCAACAGTTGCAGACAGTGATGCTGAAAAACAACCAGCTAAATGGCACTTTAGATATTGGCACATCCATCAGCAACAACCTGGATCTCGTTGATTTGCAGATTAATTTTATTGAAGCTTTCGATCCACAAACCGATGTTTCTAAAGTGGAGATAATACTTGTGAACAATCCAGTTTGCCAAGAGACAGGAGTTCCACAGACTTATTGCTCCATTACAAAATCCAATGACTCATATTCAACACCACCAAAGAACTGTGTTCCTCTTCCCTGCAGCTTAGATCAGACATTAAGCCCCAATTGCAAATGTGCATACCCATATACAGGAACTTTAACTCTCAGAGCTCCTTCCTTCTCAGACTTGGGAAACAAGTCTGTCTTTGTAATCCTGGAGTCATCTCTAATGAAGTCTTTTCAAACTCATCAAAAACCTGTGGATTCAGTTTCTATAAGCAATCCTAGGAAGAACACATATCAGTACCTCGATTTGACTTTAAAAATATTTCCATCAGGCCAGGATCGTTTCACTCGAGCAGATATTTCTGGTATAGGCTTTCTTTTGAGCAACCAAACATACAAGCCTCCTCCAATGTTTGGACCATATTATTTTATACCTGATGAGTATGACGACTTTGTGGACAATTCAGTACTAGAAGGTCCCGTGAAACACGGTAAATCTTCAAATACTGGCATCATAGCTGGAGCTGCTGCTGGTGGTTCTGCCCTGTTGGTGTTAGCACTCCTTGCATGTGTGTATGCTCTACGCCAGAAGAAAAAGTCAAAAAGAGCAACTGGGAAAAGCAATCCTTTTGAACAATGGGATCCGGATGAGAGCAATAGTAACATCCCACAGTTGAAAGGAGCAAGGCGCTTCACTTTTGAAGAGATACAAATTTGCACCAAAAACTTTTCACAAGTCAATAATATAGGATCTGGCGGTTATGGGAAGGTTTATCGAGGAAATCTTCCCAACGGGCAACTAATTGCAGTAAAGAGAGCTCAAAAGGAATCTATGCAGGGAGGGTTGgagtttaaaactgagattgaacttctatcaagggtccatcataagaatcttgttagccttgtcggtttctgctttgagcaaggagaacagatgctgatctatgagtacattgcaaatggtactttGAAGGATACTCTTTCAGGGAAGTCTGGAATTAGATTGGACTGGCTTAGAAGGTTAAAAATAGCCCTTGGTGCTGCGAGGGGACTGGATTATCTGCATGAACTTGCCAATCCTCCTATCATACACAGGGACATCAAATCCACTAACATTTTACTGGATGAACGCTTGAATACTAAAGTATCTGATTTTGGTCTCTCGAAGCCTTTGGGAGATGGAGCAAAAGGTTACATTACCACCCAAGTCAAAGGAACAATGGGCTACTTGGACCCGGAGTATTATATGACTCAACAATTGACTGAGAAAAGTGATGTGTATAGCTTCGGAGTGCTAATGTTGGAGCTGATAACCGCAAGAAGGCCAATAGAGCGAGGGAAATATATTGTGAAAGTGATGAAGAGTGCTATTGACAAGTCAAAAGCCTTATATGGCCTTGAGGAAGTTCTTGATCCAACTATTGAACTGGGGACAGCACCAAGTGGTTTTGAGAGGTTTGTGGATCTTGCAATGCAATGTGTTGAAGAGTCAAGTTCTGACAGGCCTACAATGAATTATGTGGTGAAAGAAATTGAAAACTTGTTGCAGTTGGCTGGTTCAAACCCCATTTTATCAGCATCACCATCCACCTCATCTAGTTATTATAATAATAGTGCAAATAAGGAGGGTTCCCAGCATCCTTATGAGAATGAATACTTTGGTTCAAGTGTGGTAATTCCACGTCCATGA 2868 0.3919 MDERILVFLLIILTHLLIVLANTANQDYTALLALQNEWHNTPPNWVGSDPCGGWDGIECSNSRIISISLASMDLSGQLTSDIGLLTELQILDLSYNKNLTGPLPNDIGNLRKLRNLLLISCGFSGPIPDTIGNLERLVFLSLNSNGFSGQIPAAIGNLSNVYWLDLAENQLEGSIPISNGTTPGLDMMHHTKHFHFGKNKLSGNIPSELFSPEMTLIHVLFESNQFTGSIPSTLGLVKPLEVVRFDGNFLSGPLPSNINNLTNVRELFLSNNRLSGSLPNLTGMNFLSYLDMSNNSFDPSELPPWLSTLPTLTTIMMENTKLQGHIPVSLFGQQQLQTVMLKNNQLNGTLDIGTSISNNLDLVDLQINFIEAFDPQTDVSKVEIILVNNPVCQETGVPQTYCSITKSNDSYSTPPKNCVPLPCSLDQTLSPNCKCAYPYTGTLTLRAPSFSDLGNKSVFVILESSLMKSFQTHQKPVDSVSISNPRKNTYQYLDLTLKIFPSGQDRFTRADISGIGFLLSNQTYKPPPMFGPYYFIPDEYDDFVDNSVLEGPVKHGKSSNTGIIAGAAAGGSALLVLALLACVYALRQKKKSKRATGKSNPFEQWDPDESNSNIPQLKGARRFTFEEIQICTKNFSQVNNIGSGGYGKVYRGNLPNGQLIAVKRAQKESMQGGLEFKTEIELLSRVHHKNLVSLVGFCFEQGEQMLIYEYIANGTLKDTLSGKSGIRLDWLRRLKIALGAARGLDYLHELANPPIIHRDIKSTNILLDERLNTKVSDFGLSKPLGDGAKGYITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKVMKSAIDKSKALYGLEEVLDPTIELGTAPSGFERFVDLAMQCVEESSSDRPTMNYVVKEIENLLQLAGSNPILSASPSTSSSYYNNSANKEGSQHPYENEYFGSSVVIPRP 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01933 955 ProSitePatterns Protein kinases ATP-binding region signature. 641 663 IPR017441 GO:0005524
Cca08g01933 955 MobiDBLite consensus disorder prediction 595 615 - -
Cca08g01933 955 CDD STKc_IRAK 641 907 - -
Cca08g01933 955 SMART serkin_6 635 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01933 955 Gene3D Ribonuclease Inhibitor 282 414 IPR032675 -
Cca08g01933 955 ProSiteProfiles Protein kinase domain profile. 635 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01933 955 Gene3D Phosphorylase Kinase; domain 1 605 710 - -
Cca08g01933 955 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Cca08g01933 955 SUPERFAMILY L domain-like 58 391 - -
Cca08g01933 955 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 931 - -
Cca08g01933 955 MobiDBLite consensus disorder prediction 919 942 - -
Cca08g01933 955 ProSiteProfiles Leucine-rich repeat profile. 263 285 IPR001611 GO:0005515
Cca08g01933 955 Gene3D Ribonuclease Inhibitor 23 179 IPR032675 -
Cca08g01933 955 Gene3D Ribonuclease Inhibitor 180 281 IPR032675 -
Cca08g01933 955 Gene3D Transferase(Phosphotransferase) domain 1 711 915 - -
Cca08g01933 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
Cca08g01933 955 SUPERFAMILY Protein kinase-like (PK-like) 621 931 IPR011009 -
Cca08g01933 955 Pfam Protein tyrosine and serine/threonine kinase 638 903 IPR001245 GO:0004672|GO:0006468
Cca08g01933 955 PANTHER - 6 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01933 Cca-Chr8 52047413 52054394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01933 1 953 Receptor kinase-like Gene Family AT5G49760 57.456 0.0 1030
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Cca08g01933 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01933 - - gmx:100782366 1580.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g03031 11 57460037 57466360 Cca08g01933 08 52047413 52054394 PCT