Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01932 ATGGGTGAAAGAAAAGGAATTCTACTACTGGTTTCCTTCAACTGTTTGTTGTTTGCAATAGCACAAGATGTTACCAATGATTTTGCAGCCCTAAGGTCTCTAATGGATTCTTGGCAAAGCCCAACTATCAACTGGGTGGGTTCAGATCCTTGCAATGGTCGTTGGAATGGCATTAAGTGCAAAGACTCGCGTGTTATTTCAATATCATTACCAGATATTGGTTTGACCGGCCAGCTTTCAGGAGATATTGGATCACTTTCTGAACTGAACACTCTGGATCTCTCAAACAATAGGGGCTTAACAGGATCACTTCCACCAGAAATTGGAAAGTTGAAGAAGCTATCAAAATTAACTCTTGTTGGTTGTGGTTTTACTGGTCCCATTCCAGATGAAATAGGATCTCTACAAGATCTTGTTTTCTTATCTTTAAACTCCAATACTTTTGTTGGACCAATTCCACCTTCTATTGGCTCTCTGTCAAATCTTACTTGGCTAGATTTAACTGACAATCAGCTTAGTGGATCCATCCCAGTATCAAGTGGCACTACCCCTGGTCTTGATATGTTACACAATACGCGGCACTTTCATCTTGGGAAGAATAGGCTTTCAGGAGAAATTCCTCCAGAACTTTTCAGCTTAAAAATGACTCTGATACATGTGATTTTTGAGAGCAATCAACTAGTTGGCAGCATTCCTGATACACTTGGACTTGTTAAGAGTCTGATGGTTGTGCGCTTTGAAAATAATTTATTGAACGGATATGTGCCTCGGAGCCTCAACAACCTTACCGGTGTCACAGACCTGTTGTTGTCCAACAATAAGTTGCAAGGTGCCCTGCCAAACCTTACTGGGATGAACTCCCTAGAATACTTGGATTTGAGCAACAATAGCTTTGATGAGTCACGTTTTCCACCGTGGCTTTCAAATCTGGAGAATTTAACAACACTACAAATGGAGAATGTGAACCTTATTGGAAACATTCCGGTTCCTTTATTTAGCCTTGCCCATTTACAAAATGTTGTGCTAAAAGACAACAAGCTTGGTGGAGCCTTGGATATTGGCACCAACTACAGCAAACAACTGCGTCTTATTGATTTGAAGTCAAATTCAATTGAGGACTTTGAGCAGCGAAATGATCTCTCGCATATCAAGATAATACTTAAGTCCAACCCGATTTGTTTAGAAACAGGAGTTACAATGAGTTACTGCACCACGGACAGTATTTTAGATACAAAACCACAGAATTGTTTGCTGGATATTTGCGGGCCAAGTCAGACACTGAGTCCCAAGTGCAAATGTGGATATCCAATAACAGGAACTTTAACTGTCAGAGCTCCTTCCTTTTTTGAATGGAGAAATGAAACATCCCTGGAGGAATCTCTTTTGCAAGAATTAAAATTTTATAATCTATCTGTGGATTCAGTTTCTTTAACCATTTCAACTCAAGATCCATTTCGTAGTTTTGAGTTCACAATACAAATTTTCCCACCAGGCCAAGATCATTTCAACCAAGAAGTCATATCTAGTATAAGCTCTGTGCTTGGCAACCTAAGTGCTTATAGTCCATATGATTTTATTACAGGAAACCCAGGTGAAGGATCTAAGGTGACAAGTAATTCATCGAGCTCTGTCATAATAATTGGAGCAGCAGTTGCTGGTTCTTGTGTTCTGCTTGTGCTACTAGTCCTTGCAGGTGTTTATGCTTTCCGCCAGAAGTCAAGGGCGGAAAGAGCAATTTCTCAAAGCAATCCTTTTGGAAACTGGGATCCAGATAAAAGCAACTGTGACACCCCTCAGTTAAAAGCAGCAAGGCAGTTCTCTTTCAAAGAAATTAAGAAATACACAAACAACTTCTCACAAGCCAATGATATTGGATCAGGAGGTTATGGAAAGGTTTATAGGGGAACTCTTCCCTGTGGGAAAGTGGTAGCCATAAAACGAGCTCAAAAAGAATCAAAGCAGGGAGGGCCAGAATTCAAAGCTGAGATTGAACTTCTTTCAAGGGTCCACCACAAGAATCTGGTTAGCCTTGTGGGATTCTGCTTTGAACGAGAAGAACAAATGCTGGTTTATGAGTTTGTCCAAAATGGAGCTTTGAAGGATGCACTCACAGGGAAATCTGGAATTATATTGAGCTGGACTAGAAGACTGAAAGTAGCCCTTGGTGCTGCCAGGGGTTTGGCTTATCTTCATGAACATGCTGATCCCCCAATTATACACAGGGATATCAAATCAAACAACATTTTGCTGGATGAAAACTATACTGCTAAAGTGGCTGATTTTGGTCTCTCCAAGTCTATCTTAGATGACGAAAAAGATCACGTTACCACTCAAGTTAAAGGAACAATGGGCTACTTGGATCCAGACTATTATACTAGTCAGCAGTTAACTGAAAAGAGTGATGTTTATAGTTTTGGAGTGCTAATGCTGGAGCTGATTACTGCAAGAAAGCCAATAGAGCGAGGGAAATACATTGTGAAAGTGGTCAGGAATACAATAGATAAGACAAAAGACTTGTATGGTCTTCACCAAATTATTGACCCAGCCATCTGTTCAGGATCAACACTGGAGGGTTTTGAGAAGTTTGTGGACCTTGCAATGGAGTGTGTTGAAGTGATGGGAGCTGAAAGGCCTGCAATGAGTGATGTGGTCAAAGAAATTGAAGACATGTTGCGGTCTGCTGGTTTGCTCCAAACATCTGAATCTGTAACATCCACTTCATCTAGTTCTAGATATCAGGAGactcctctgaaggagtttcttgataagtatgaATTAGCTCTTCACAAGAAGCACAAGGAAGAATCTTTCGCAGATATTGAATCAAGGAGCTCAAGCCCCTTGCTGAAAACCAGATGTTCCTTTGAATTTCAGCTCTCTAGATTGTACACAAGAGAAATGTTCATGAAATTCCAGTTAGAAGTGGAAGAAGTGTATTCTTGTTTTGGTACAACACAATTACATGTGGATGGCTCCATCATAATTTTCTTGGTTAAGGAGCGTGTTTTGGTTGAGGGAAACAGACGCGAGATTAGGGATTTTGAAGTTTTGTACAGTAGGACGGCTGGTGAAGTTCGTTGCATCTGTAATTGCTTTAATTTTTATGGATATCTATGTCGCCATGCACTTTGCGTACTCAATTTTAATGGGGTTGAAGAGATACCTCACAAATACATTCTTTCACGATGGAAGAAAGATTACAAGCGTCTTTATGTTCCTGATCACAGCACTAGTAGTGTTGATGATACTGACTGCAGTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGTATACTTTCTCTAGACCATTACAATGTAGCGTTACAGTCTTTAGAAGAATCACTGAGTAAGGTTCATGATGTAGAACAGAGACAGGAGTAA 3399 0.3995 MGERKGILLLVSFNCLLFAIAQDVTNDFAALRSLMDSWQSPTINWVGSDPCNGRWNGIKCKDSRVISISLPDIGLTGQLSGDIGSLSELNTLDLSNNRGLTGSLPPEIGKLKKLSKLTLVGCGFTGPIPDEIGSLQDLVFLSLNSNTFVGPIPPSIGSLSNLTWLDLTDNQLSGSIPVSSGTTPGLDMLHNTRHFHLGKNRLSGEIPPELFSLKMTLIHVIFESNQLVGSIPDTLGLVKSLMVVRFENNLLNGYVPRSLNNLTGVTDLLLSNNKLQGALPNLTGMNSLEYLDLSNNSFDESRFPPWLSNLENLTTLQMENVNLIGNIPVPLFSLAHLQNVVLKDNKLGGALDIGTNYSKQLRLIDLKSNSIEDFEQRNDLSHIKIILKSNPICLETGVTMSYCTTDSILDTKPQNCLLDICGPSQTLSPKCKCGYPITGTLTVRAPSFFEWRNETSLEESLLQELKFYNLSVDSVSLTISTQDPFRSFEFTIQIFPPGQDHFNQEVISSISSVLGNLSAYSPYDFITGNPGEGSKVTSNSSSSVIIIGAAVAGSCVLLVLLVLAGVYAFRQKSRAERAISQSNPFGNWDPDKSNCDTPQLKAARQFSFKEIKKYTNNFSQANDIGSGGYGKVYRGTLPCGKVVAIKRAQKESKQGGPEFKAEIELLSRVHHKNLVSLVGFCFEREEQMLVYEFVQNGALKDALTGKSGIILSWTRRLKVALGAARGLAYLHEHADPPIIHRDIKSNNILLDENYTAKVADFGLSKSILDDEKDHVTTQVKGTMGYLDPDYYTSQQLTEKSDVYSFGVLMLELITARKPIERGKYIVKVVRNTIDKTKDLYGLHQIIDPAICSGSTLEGFEKFVDLAMECVEVMGAERPAMSDVVKEIEDMLRSAGLLQTSESVTSTSSSSRYQETPLKEFLDKYELALHKKHKEESFADIESRSSSPLLKTRCSFEFQLSRLYTREMFMKFQLEVEEVYSCFGTTQLHVDGSIIIFLVKERVLVEGNRREIRDFEVLYSRTAGEVRCICNCFNFYGYLCRHALCVLNFNGVEEIPHKYILSRWKKDYKRLYVPDHSTSSVDDTDCSQWSNQLFRSALQVVEEGILSLDHYNVALQSLEESLSKVHDVEQRQE 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01932 1132 Gene3D Transferase(Phosphotransferase) domain 1 694 910 - -
Cca08g01932 1132 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Cca08g01932 1132 PANTHER - 7 917 - -
Cca08g01932 1132 Gene3D Ribonuclease Inhibitor 16 182 IPR032675 -
Cca08g01932 1132 SUPERFAMILY Protein kinase-like (PK-like) 604 908 IPR011009 -
Cca08g01932 1132 Pfam Protein tyrosine and serine/threonine kinase 621 886 IPR001245 GO:0004672|GO:0006468
Cca08g01932 1132 CDD STKc_IRAK 624 890 - -
Cca08g01932 1132 Gene3D Ribonuclease Inhibitor 183 390 IPR032675 -
Cca08g01932 1132 SMART 26again6 1025 1052 IPR006564 GO:0008270
Cca08g01932 1132 SMART serkin_6 618 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01932 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Cca08g01932 1132 Gene3D Phosphorylase Kinase; domain 1 589 693 - -
Cca08g01932 1132 SUPERFAMILY L domain-like 31 298 - -
Cca08g01932 1132 SUPERFAMILY RNI-like 280 378 - -
Cca08g01932 1132 ProSiteProfiles Zinc finger SWIM-type profile. 1014 1050 IPR007527 GO:0008270
Cca08g01932 1132 ProSiteProfiles Protein kinase domain profile. 618 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01932 1132 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 7 917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01932 Cca-Chr8 52027968 52037589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01932 1 924 Receptor kinase-like Gene Family AT5G49760 52.760 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Cca08g01932 PK_Tyr_Ser-Thr 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01932 - - gmx:100810323 1396.72