Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01931 ATGGAAGAGACCTCTCTTTGCTGCGAACAATTGCCAGATGGATGCATTGAGGTTCAGAAAGAGGAAGACGGTGTGCTGATTGAATTGGATTGTCAAAATGGTTTTCCTGAAGGAAGAAAGGAGTTTGTTGCACCTGCTGTTGGAATGGAGTTTGAGTCGTATGATGATGCTTACAATTACTACATCTGCTATGCCAAGGAAGTGGGGTTTCGAGTAAGGGTGAAGAATTCGTGGTTCAAGCGGAATAGCCGAGAAAAATATGGTGCTGTGCTTTGTTGTAGCAGTCAGGGTTTCAAAAGAATAAAGGATGTTAATCATTTGAGGAAGGAGACAAGAACTGGTTGTCCTGCGATGATAAGGATGCGGTTGGTGGAGTCTCAGAGATGGAGGGTACTTGAGGTTATGCTTGAACATAATCACATGTTAGGTGCTAAGGTACACAAATCGGTTAAGAAGATGGGAACTGGGACAAAGAGGAAGTCATTGCCTAGTTCTGATGCTGAGGGGCAAACAATTAAGTTGTATCGTGCACTTGTGATTGATGCAGGAGCTCTTCACAAGAAGCACAAGGAAGAATCTTTCGCAGATATTGAATCAAGGAGCTCAAGCCCCTTGCTGAAAACCAGATGTTCCTTTGAATTTCAGCTCTCTAGATTGTACACAAGAGAAATGTTCATGAAATTCCAGTTAGAAGTGGAAGAAGTGTATTCTTGTTTTGGTACAACACAATTACATGTGGATGGCTCCATCATAATTTTCTTGGTTAAGGAGCGTGTTTTGGTTGAGGGAAACAGACGCGAGATTAGGGATTTTGAAGTTTTGTACAGTAGGACGGCTGGTGAAGTTCGTTGCATCTGTAATTGCTTTAATTTTTATGGATATCTATGTCGCCATGCACTTTGCGTACTCAATTTTAATGGGGTTGAAGAGATACCTCACAAATACATTCTTTCACGATGGAAGAAAGATTACAAGCGTCTTTATGTTCCTGATCACAGCACTAGTAGTGTTGATGATACTGACTGCAGTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGTATACTTTCTCTAGACCATTACAATGTAGCGTTACAGTCTTTAGAAGAATCACTGAGTAAGGTTCATGATGTAGAACAGAGACAGGAGTAA 1170 0.412 MEETSLCCEQLPDGCIEVQKEEDGVLIELDCQNGFPEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHMLGAKVHKSVKKMGTGTKRKSLPSSDAEGQTIKLYRALVIDAGALHKKHKEESFADIESRSSSPLLKTRCSFEFQLSRLYTREMFMKFQLEVEEVYSCFGTTQLHVDGSIIIFLVKERVLVEGNRREIRDFEVLYSRTAGEVRCICNCFNFYGYLCRHALCVLNFNGVEEIPHKYILSRWKKDYKRLYVPDHSTSSVDDTDCSQWSNQLFRSALQVVEEGILSLDHYNVALQSLEESLSKVHDVEQRQE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01931 389 SMART 26again6 282 309 IPR006564 GO:0008270
Cca08g01931 389 Pfam SWIM zinc finger 279 303 IPR007527 GO:0008270
Cca08g01931 389 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 18 174 - -
Cca08g01931 389 ProSiteProfiles Zinc finger SWIM-type profile. 271 307 IPR007527 GO:0008270
Cca08g01931 389 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 18 174 IPR031052 GO:0006355
Cca08g01931 389 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 184 386 - -
Cca08g01931 389 Pfam FAR1 DNA-binding domain 59 142 IPR004330 -
Cca08g01931 389 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 184 386 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01931 Cca-Chr8 52021830 52023830 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca08g01931 FAR1 1.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01931 - K17604 gmx:100796448 397.127