Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca08g01926 | ATGGAAGAGACCTCTCTTTGCTGCGAACAATTGCCAGATGGATGCATTGAGGTTCAGAAAGAGGAAGACGGTGTGCTGATTGAATTGGATTGTCAAAATGGTTTTCCTGAAGGAAGAAAGGAGTTTGTTGCACCTGCTGTTGGAATGGAGTTTGAGTCGTATGATGATGCTTACAATTACTACATCTGCTATGCCAAGGAAGTGGGGTTTCGAGTAAGGGTGAAGAATTCGTGGTTCAAGCGGAATAGCCGAGAAAAATATGGTGCTGTGCTTTGTTGTAGCAGTCAGGGTTTCAAAAGAATAAAGGATGTTAATCATTTGAGGAAGGAGACAAGAACTGGTTGTCCTGCGATGATAAGGATGCGGTTGGTGGAGTCTCAGAGATGGAGGGTACTTGAGGTTATGCTTGAACATAATCACATGTTAGGTGCTAAGGTACACAAATCGGTTAAGAAGATGGGAACTGGGACAAAGAGGAAGTCATTGCCTAGTTCTGATGCTGAGGGGCAAACAATTAAGTTGTATCGTGCACTTGTGATTGATGCAGGAGCTCTTCACAAGAAGCACAAGGAAGAATCTTTCGCAGATATTGAATCAAGGAGCTCAAGCCCCTTGCTGAAAACCAGATGTTCCTTTGAATTTCAGCTCTCTAGATTGTACACAAGAGAAATGTTCATGAAATTCCAGTTAGAAGTGGAAGAAGTGTATTCTTGTTTTGGTACAACACAATTACATGTGGATGGCTCCATCATAATTTTCTTGGTTAAGGAGCGTGTTTTGGTTGAGGGAAACAGACGCGAGATTAGGGATTTTGAAGTTTTGTACAGTAGGACGGCTGGTGAAGTTCGTTGCATCTGTAATTGCTTTAATTTTTATGGATATCTATGTCGCCATGCACTTTGCGTACTCAATTTTAATGGGGTTGAAGAGATACCTCACAAATACATTCTTTCACGATGGAAGAAAGATTACAAGCGTCTTTATGTTCCTGATCACAGCACTAGTAGTGTTGATGATACTGACTGCAGTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGTATACTTTCTCTAGACCATTACAATGTAGCGTTACAGTCTTTAGAAGAATCACTGAGTAAGGTTCATGATGTAGAACAGAGACAGGATGGTGTTGCTTCGGAAGTTGAACAATTGACATGCTGTTTCCTGGAAGGTTTTCCTCATTGGGTAGTTTGGCCTATCTTAAAGGACATGTACCTACATTTGAGAAAAGGGTTAAAACTAGCTAGCAAGAGGCATGAGGCTCATGCGTATGATATCGAGCCACAAGGAAAGCAGTGCAGAGGCATAGAGCAGAGAGCATTGACTGtcactcgtctcatctcttcgcaAATTCATGTGAACCCTCTGCCCATGACCGACGAAGATACCATGTGTTCGCCAAATGACAAGGACTTGTCGCTGAGTCCTAATCTTGAGATAACGATAGATGATGGTTCTCCAAACAGTGAGCAACTACTTGAGGTTGAGGATGAGGGCAATGAGCTTGAGAATGAATGTGGACAATTGTTTGAAGTTGATGGAAGTGAACATGAAAATGGGAGGGATGAAACAACAGTAGTTGATAGTCATAGTGGAGAATCTCAAGGGAAAGACTGCCCCCCACCAATTGTGGGAATGGAGTTTGATACTTATGACGATGCCTACAACTATTACAATACTTATGCCAAGGACATTGGATTTGCCATTCGGGTTAAATCTTCATGGACCAAACGTAATAGCAAAGAGAAGCGTGGCGCTGTTCTGTGCTGCAACTGTGAGGGTTTCAAAACAACCAAAGAAGCAAATAGTCATAGGAAAGAAACTAGAACAGGCTGTCTTGCAATGATTAGATTGAGATTAGTGGAATCTAACAGGTGGAGAGTGGATGAGGTCAAGCTTGAACATAACCATTCATTTGATCCTGAAAGGGCACAAAACTCTAAATCACATAAGAGGATGGACAGTAGGGCCAAAAGAAAAGTTGAGCCAACTCTAGATGTTGAAGTAAGAACAATCAAGTTATATCGAACATCTGTTGTAGATTCATCAGGTTATGGTAGCTCAAATTCAACTGAGGGAGGCACTAGCAACAACATTAATTGTTCCAGACGTTTgaaacttaaaaaaggtgacccagaacttatttcaaattacttctgtcgcatccagtcgatgaatcctaactttttctatgtgatggatctgaatgatgatggacaactgaggaatgtattttggattgattctagatctagagctgcttatagttattttggtgatgtgattgcatttgactccacgtgtttgtcaaacaattatgagataccacttgttgcatttgttggtgttaatcaccatgggaaatctgttttactaggatgtggtctgcttgcagatgaaacatttgaaacatatatttggttatttagggcatggcttacatgtatgactggtcgccctccacaaactgttatcacaaaccagtgtaaggccatgcaatgtgcaattgcagaggttttccccagagctcaccatagaATTTGTCTATCCCAAGTCATGCAGAGCATTCTTGGGTGTTTTGTGCAGTTTCAGGAGTACGACACATTTCAGATAGAGCTGACTAAAGTGATATATAACTCTAAAACAGTAGATGAATTTGAGAGGGCTTGGGAAGATCTAACCGAGCATTTTGGAATAAGAAATCACGAAAAGCTCCAAACCTTACATGAGGAAcgagagcattgggctccagtgtactccaaggacacattttttgctggaatatctgattatgagaaaggtgagtctgtggttcccttttttaaaggtcatgttcatcaacaaacttctttgaaagaattttttgagatttatgAATTAGTTCAGCAAAAAAAGCATAAAACTGAAGTTCTTGATGATTTTGAGTCACGCGATTTGAGCCATTTACTGAAGACAGGATGCTACTATGAGTTGCAGCTGTCTAAATTGTACACAAATGCAGTATTCAGGAAGTTCCAAAACGAGGTGGTGATGATGTCCTCTTGTTTCAGCATCACACAGACTCAAACAAATGGGACTGTAGTAACGTACATGGTAAAAGAACGTGAAGGGGAAGAACCTGCAAGAGATGTTAGGCATTTTGAAGTCATGTATGATAAAGCTGGAGCAGAAGTGCGTTGCATTTGTAGTTGCTTCAACTTCAAAGGGTACCTGTGCAGACATGCCTTGTATATCCTTAATTACAATGGTGTGGAGGAAATTCCATGTCAGTACATTTTGTCAAGATGGAGGAAGGATTTTAAGCGTTTGTATGTACCTCATCTCAGTGCCGATAATGTCGATATTAACAACCCAGTTCAATGTTTTGATCATTTGTACAAACGAGCCATGCAAGTTGTTGAAGAAGGGATGAGATCCCAAGATCATTATATGGTTTCTTGGCAAGTATTTAAAGAGTCTTTGAATAAGATTCGCCTTGTAGCAGACAAGATTGAATAA | 3540 | 0.341 | MEETSLCCEQLPDGCIEVQKEEDGVLIELDCQNGFPEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHMLGAKVHKSVKKMGTGTKRKSLPSSDAEGQTIKLYRALVIDAGALHKKHKEESFADIESRSSSPLLKTRCSFEFQLSRLYTREMFMKFQLEVEEVYSCFGTTQLHVDGSIIIFLVKERVLVEGNRREIRDFEVLYSRTAGEVRCICNCFNFYGYLCRHALCVLNFNGVEEIPHKYILSRWKKDYKRLYVPDHSTSSVDDTDCSQWSNQLFRSALQVVEEGILSLDHYNVALQSLEESLSKVHDVEQRQDGVASEVEQLTCCFLEGFPHWVVWPILKDMYLHLRKGLKLASKRHEAHAYDIEPQGKQCRGIEQRALTVTRLISSQIHVNPLPMTDEDTMCSPNDKDLSLSPNLEITIDDGSPNSEQLLEVEDEGNELENECGQLFEVDGSEHENGRDETTVVDSHSGESQGKDCPPPIVGMEFDTYDDAYNYYNTYAKDIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEANSHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKRMDSRAKRKVEPTLDVEVRTIKLYRTSVVDSSGYGSSNSTEGGTSNNINCSRRLKLKKGDPELISNYFCRIQSMNPNFFYVMDLNDDGQLRNVFWIDSRSRAAYSYFGDVIAFDSTCLSNNYEIPLVAFVGVNHHGKSVLLGCGLLADETFETYIWLFRAWLTCMTGRPPQTVITNQCKAMQCAIAEVFPRAHHRICLSQVMQSILGCFVQFQEYDTFQIELTKVIYNSKTVDEFERAWEDLTEHFGIRNHEKLQTLHEEREHWAPVYSKDTFFAGISDYEKGESVVPFFKGHVHQQTSLKEFFEIYELVQQKKHKTEVLDDFESRDLSHLLKTGCYYELQLSKLYTNAVFRKFQNEVVMMSSCFSITQTQTNGTVVTYMVKEREGEEPARDVRHFEVMYDKAGAEVRCICSCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDFKRLYVPHLSADNVDINNPVQCFDHLYKRAMQVVEEGMRSQDHYMVSWQVFKESLNKIRLVADKIE | 1179 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca08g01926 | 1179 | PANTHER | PROTEIN FAR1-RELATED SEQUENCE 8 | 184 | 382 | - | - | |
Cca08g01926 | 1179 | PANTHER | PROTEIN FAR1-RELATED SEQUENCE 8 | 27 | 173 | - | - | |
Cca08g01926 | 1179 | PANTHER | PROTEIN FAR1-RELATED SEQUENCE 10-RELATED | 184 | 382 | IPR031052 | GO:0006355 | |
Cca08g01926 | 1179 | Pfam | SWIM zinc finger | 1071 | 1090 | IPR007527 | GO:0008270 | |
Cca08g01926 | 1179 | Pfam | SWIM zinc finger | 279 | 303 | IPR007527 | GO:0008270 | |
Cca08g01926 | 1179 | ProSiteProfiles | Zinc finger SWIM-type profile. | 271 | 307 | IPR007527 | GO:0008270 | |
Cca08g01926 | 1179 | ProSiteProfiles | Zinc finger SWIM-type profile. | 1061 | 1097 | IPR007527 | GO:0008270 | |
Cca08g01926 | 1179 | MobiDBLite | consensus disorder prediction | 651 | 674 | - | - | |
Cca08g01926 | 1179 | Pfam | MULE transposase domain | 775 | 868 | IPR018289 | - | |
Cca08g01926 | 1179 | MobiDBLite | consensus disorder prediction | 529 | 555 | - | - | |
Cca08g01926 | 1179 | PANTHER | PROTEIN FAR1-RELATED SEQUENCE 10-RELATED | 27 | 173 | IPR031052 | GO:0006355 | |
Cca08g01926 | 1179 | PANTHER | PROTEIN FAR1-RELATED SEQUENCE 10-RELATED | 499 | 1176 | IPR031052 | GO:0006355 | |
Cca08g01926 | 1179 | Pfam | FAR1 DNA-binding domain | 59 | 142 | IPR004330 | - | |
Cca08g01926 | 1179 | Pfam | FAR1 DNA-binding domain | 570 | 654 | IPR004330 | - | |
Cca08g01926 | 1179 | SMART | 26again6 | 1072 | 1099 | IPR006564 | GO:0008270 | |
Cca08g01926 | 1179 | SMART | 26again6 | 282 | 309 | IPR006564 | GO:0008270 | |
Cca08g01926 | 1179 | PANTHER | PROTEIN FAR1-RELATED SEQUENCE 8 | 499 | 1176 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca08g01926 | Cca-Chr8 | 51967997 | 51976732 | Dispersed/Proximal |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | FAR1 | Cca08g01926 | MULE | 5.6e-26 | CL0219 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca08g01926 | K17604 | - | gmx:100796448 | 1338.55 |