Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01926 ATGGAAGAGACCTCTCTTTGCTGCGAACAATTGCCAGATGGATGCATTGAGGTTCAGAAAGAGGAAGACGGTGTGCTGATTGAATTGGATTGTCAAAATGGTTTTCCTGAAGGAAGAAAGGAGTTTGTTGCACCTGCTGTTGGAATGGAGTTTGAGTCGTATGATGATGCTTACAATTACTACATCTGCTATGCCAAGGAAGTGGGGTTTCGAGTAAGGGTGAAGAATTCGTGGTTCAAGCGGAATAGCCGAGAAAAATATGGTGCTGTGCTTTGTTGTAGCAGTCAGGGTTTCAAAAGAATAAAGGATGTTAATCATTTGAGGAAGGAGACAAGAACTGGTTGTCCTGCGATGATAAGGATGCGGTTGGTGGAGTCTCAGAGATGGAGGGTACTTGAGGTTATGCTTGAACATAATCACATGTTAGGTGCTAAGGTACACAAATCGGTTAAGAAGATGGGAACTGGGACAAAGAGGAAGTCATTGCCTAGTTCTGATGCTGAGGGGCAAACAATTAAGTTGTATCGTGCACTTGTGATTGATGCAGGAGCTCTTCACAAGAAGCACAAGGAAGAATCTTTCGCAGATATTGAATCAAGGAGCTCAAGCCCCTTGCTGAAAACCAGATGTTCCTTTGAATTTCAGCTCTCTAGATTGTACACAAGAGAAATGTTCATGAAATTCCAGTTAGAAGTGGAAGAAGTGTATTCTTGTTTTGGTACAACACAATTACATGTGGATGGCTCCATCATAATTTTCTTGGTTAAGGAGCGTGTTTTGGTTGAGGGAAACAGACGCGAGATTAGGGATTTTGAAGTTTTGTACAGTAGGACGGCTGGTGAAGTTCGTTGCATCTGTAATTGCTTTAATTTTTATGGATATCTATGTCGCCATGCACTTTGCGTACTCAATTTTAATGGGGTTGAAGAGATACCTCACAAATACATTCTTTCACGATGGAAGAAAGATTACAAGCGTCTTTATGTTCCTGATCACAGCACTAGTAGTGTTGATGATACTGACTGCAGTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGTATACTTTCTCTAGACCATTACAATGTAGCGTTACAGTCTTTAGAAGAATCACTGAGTAAGGTTCATGATGTAGAACAGAGACAGGATGGTGTTGCTTCGGAAGTTGAACAATTGACATGCTGTTTCCTGGAAGGTTTTCCTCATTGGGTAGTTTGGCCTATCTTAAAGGACATGTACCTACATTTGAGAAAAGGGTTAAAACTAGCTAGCAAGAGGCATGAGGCTCATGCGTATGATATCGAGCCACAAGGAAAGCAGTGCAGAGGCATAGAGCAGAGAGCATTGACTGtcactcgtctcatctcttcgcaAATTCATGTGAACCCTCTGCCCATGACCGACGAAGATACCATGTGTTCGCCAAATGACAAGGACTTGTCGCTGAGTCCTAATCTTGAGATAACGATAGATGATGGTTCTCCAAACAGTGAGCAACTACTTGAGGTTGAGGATGAGGGCAATGAGCTTGAGAATGAATGTGGACAATTGTTTGAAGTTGATGGAAGTGAACATGAAAATGGGAGGGATGAAACAACAGTAGTTGATAGTCATAGTGGAGAATCTCAAGGGAAAGACTGCCCCCCACCAATTGTGGGAATGGAGTTTGATACTTATGACGATGCCTACAACTATTACAATACTTATGCCAAGGACATTGGATTTGCCATTCGGGTTAAATCTTCATGGACCAAACGTAATAGCAAAGAGAAGCGTGGCGCTGTTCTGTGCTGCAACTGTGAGGGTTTCAAAACAACCAAAGAAGCAAATAGTCATAGGAAAGAAACTAGAACAGGCTGTCTTGCAATGATTAGATTGAGATTAGTGGAATCTAACAGGTGGAGAGTGGATGAGGTCAAGCTTGAACATAACCATTCATTTGATCCTGAAAGGGCACAAAACTCTAAATCACATAAGAGGATGGACAGTAGGGCCAAAAGAAAAGTTGAGCCAACTCTAGATGTTGAAGTAAGAACAATCAAGTTATATCGAACATCTGTTGTAGATTCATCAGGTTATGGTAGCTCAAATTCAACTGAGGGAGGCACTAGCAACAACATTAATTGTTCCAGACGTTTgaaacttaaaaaaggtgacccagaacttatttcaaattacttctgtcgcatccagtcgatgaatcctaactttttctatgtgatggatctgaatgatgatggacaactgaggaatgtattttggattgattctagatctagagctgcttatagttattttggtgatgtgattgcatttgactccacgtgtttgtcaaacaattatgagataccacttgttgcatttgttggtgttaatcaccatgggaaatctgttttactaggatgtggtctgcttgcagatgaaacatttgaaacatatatttggttatttagggcatggcttacatgtatgactggtcgccctccacaaactgttatcacaaaccagtgtaaggccatgcaatgtgcaattgcagaggttttccccagagctcaccatagaATTTGTCTATCCCAAGTCATGCAGAGCATTCTTGGGTGTTTTGTGCAGTTTCAGGAGTACGACACATTTCAGATAGAGCTGACTAAAGTGATATATAACTCTAAAACAGTAGATGAATTTGAGAGGGCTTGGGAAGATCTAACCGAGCATTTTGGAATAAGAAATCACGAAAAGCTCCAAACCTTACATGAGGAAcgagagcattgggctccagtgtactccaaggacacattttttgctggaatatctgattatgagaaaggtgagtctgtggttcccttttttaaaggtcatgttcatcaacaaacttctttgaaagaattttttgagatttatgAATTAGTTCAGCAAAAAAAGCATAAAACTGAAGTTCTTGATGATTTTGAGTCACGCGATTTGAGCCATTTACTGAAGACAGGATGCTACTATGAGTTGCAGCTGTCTAAATTGTACACAAATGCAGTATTCAGGAAGTTCCAAAACGAGGTGGTGATGATGTCCTCTTGTTTCAGCATCACACAGACTCAAACAAATGGGACTGTAGTAACGTACATGGTAAAAGAACGTGAAGGGGAAGAACCTGCAAGAGATGTTAGGCATTTTGAAGTCATGTATGATAAAGCTGGAGCAGAAGTGCGTTGCATTTGTAGTTGCTTCAACTTCAAAGGGTACCTGTGCAGACATGCCTTGTATATCCTTAATTACAATGGTGTGGAGGAAATTCCATGTCAGTACATTTTGTCAAGATGGAGGAAGGATTTTAAGCGTTTGTATGTACCTCATCTCAGTGCCGATAATGTCGATATTAACAACCCAGTTCAATGTTTTGATCATTTGTACAAACGAGCCATGCAAGTTGTTGAAGAAGGGATGAGATCCCAAGATCATTATATGGTTTCTTGGCAAGTATTTAAAGAGTCTTTGAATAAGATTCGCCTTGTAGCAGACAAGATTGAATAA 3540 0.341 MEETSLCCEQLPDGCIEVQKEEDGVLIELDCQNGFPEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHMLGAKVHKSVKKMGTGTKRKSLPSSDAEGQTIKLYRALVIDAGALHKKHKEESFADIESRSSSPLLKTRCSFEFQLSRLYTREMFMKFQLEVEEVYSCFGTTQLHVDGSIIIFLVKERVLVEGNRREIRDFEVLYSRTAGEVRCICNCFNFYGYLCRHALCVLNFNGVEEIPHKYILSRWKKDYKRLYVPDHSTSSVDDTDCSQWSNQLFRSALQVVEEGILSLDHYNVALQSLEESLSKVHDVEQRQDGVASEVEQLTCCFLEGFPHWVVWPILKDMYLHLRKGLKLASKRHEAHAYDIEPQGKQCRGIEQRALTVTRLISSQIHVNPLPMTDEDTMCSPNDKDLSLSPNLEITIDDGSPNSEQLLEVEDEGNELENECGQLFEVDGSEHENGRDETTVVDSHSGESQGKDCPPPIVGMEFDTYDDAYNYYNTYAKDIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEANSHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKRMDSRAKRKVEPTLDVEVRTIKLYRTSVVDSSGYGSSNSTEGGTSNNINCSRRLKLKKGDPELISNYFCRIQSMNPNFFYVMDLNDDGQLRNVFWIDSRSRAAYSYFGDVIAFDSTCLSNNYEIPLVAFVGVNHHGKSVLLGCGLLADETFETYIWLFRAWLTCMTGRPPQTVITNQCKAMQCAIAEVFPRAHHRICLSQVMQSILGCFVQFQEYDTFQIELTKVIYNSKTVDEFERAWEDLTEHFGIRNHEKLQTLHEEREHWAPVYSKDTFFAGISDYEKGESVVPFFKGHVHQQTSLKEFFEIYELVQQKKHKTEVLDDFESRDLSHLLKTGCYYELQLSKLYTNAVFRKFQNEVVMMSSCFSITQTQTNGTVVTYMVKEREGEEPARDVRHFEVMYDKAGAEVRCICSCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDFKRLYVPHLSADNVDINNPVQCFDHLYKRAMQVVEEGMRSQDHYMVSWQVFKESLNKIRLVADKIE 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01926 1179 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 184 382 - -
Cca08g01926 1179 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 27 173 - -
Cca08g01926 1179 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 184 382 IPR031052 GO:0006355
Cca08g01926 1179 Pfam SWIM zinc finger 1071 1090 IPR007527 GO:0008270
Cca08g01926 1179 Pfam SWIM zinc finger 279 303 IPR007527 GO:0008270
Cca08g01926 1179 ProSiteProfiles Zinc finger SWIM-type profile. 271 307 IPR007527 GO:0008270
Cca08g01926 1179 ProSiteProfiles Zinc finger SWIM-type profile. 1061 1097 IPR007527 GO:0008270
Cca08g01926 1179 MobiDBLite consensus disorder prediction 651 674 - -
Cca08g01926 1179 Pfam MULE transposase domain 775 868 IPR018289 -
Cca08g01926 1179 MobiDBLite consensus disorder prediction 529 555 - -
Cca08g01926 1179 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 173 IPR031052 GO:0006355
Cca08g01926 1179 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 499 1176 IPR031052 GO:0006355
Cca08g01926 1179 Pfam FAR1 DNA-binding domain 59 142 IPR004330 -
Cca08g01926 1179 Pfam FAR1 DNA-binding domain 570 654 IPR004330 -
Cca08g01926 1179 SMART 26again6 1072 1099 IPR006564 GO:0008270
Cca08g01926 1179 SMART 26again6 282 309 IPR006564 GO:0008270
Cca08g01926 1179 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 499 1176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01926 Cca-Chr8 51967997 51976732 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca08g01926 MULE 5.6e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01926 K17604 - gmx:100796448 1338.55