Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01920 ATGGGGGATCAGGGTGTTTTAGGTGTTAATGTTGGGAGGGAGGAAGAGGAGGATGAGTTTTGTAGTTGTTGTGGAGATGAAGATGAGGAGGTGTGGAAAGAGACTGAGGAGCCTCTGGTGGAAGGATTGAAGGATGATGAACTTGATGAATTTTCAGTGAAAATGTTCTTCAAGGGGTTGTCAATGGCTGGGGTTGAAAATTCAAGTTCTGGGTTTTCTGGGATTGGAGTGGTCATGGAAAGGTCACCGGACCTTCCTGCTTTAAGGGTGCAGAAAAAGCTTGACTTTTATGCAGAGGAGTCAGTGGTTGACTATTTGGCACTCTTGGATGGCTTGCTGGAAGCTGTGCAGAACAAGATCCGCAGGGTTTATGCTTTCACAGACTCTGAGTTGTTGCACGATCAGATAACATTTGGGAAAAAAATGGAGATGCCTCTTTTGATGGCACTGAGAGAAAGGATTCTGGAACTTGCCAATAATTTTGAAGATTTTGTTTTGAAGCATATACCCTCTACTGATCTTGACCAGCCACTGCATTTGGCCAAAGTAGCTATTGGTCTTGTCACTTTCCCTGTAAATGGTGAAAGACTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCCAATTATGATTATGTTGAAATGTTCACACACATTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGTAAAGTTCAATCTTGTCAGGTCCCTGTAAGATGTCCTCAACCAGGATGCAAGTATTGCATCTCTGTAAGTGAATGCAGATCTTTTCTTCCATTCACCTCCTTTGAATCACTGGAGAAAGCTGTTTCAGAAGCAAATATTGACCATTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGTTTATCAGCTAGGGCCAGTTCATCTAGTCAGTCTGACAATTCTTGTATCGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTAGACTGTAAGGTTCCTTGGCATTCTTCTATGAGCTGTGTAGAATACCAGAATCTGCCAGAGGAAGAGAGAGATGCTTCTGACATTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCGGTGTCGTAGAATGATTGAGCTTACTCAAGGCTGTTACCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCCGAATACCGAGACGGGCAACAGGCATGCCAGTGTGCATATTGGGATGAAGATAACTCTGAAGACTCAGTGGCGCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAATTCTCTGTCCATGATTGTTGATGCATACTCTGACCAAGAGCGATCGCAGCTTGCGCTAATTCAAAGGTTCCTAGCTGGTGGTTTCAGTCTCAGTGACCACAATCCTTACCAATCTCCTCCACGCTGTACAGACTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTTTCTGTCATAAGTGACAACTACTATGAAGATTACATTCAGTGA 1548 0.436 MGDQGVLGVNVGREEEEDEFCSCCGDEDEEVWKETEEPLVEGLKDDELDEFSVKMFFKGLSMAGVENSSSGFSGIGVVMERSPDLPALRVQKKLDFYAEESVVDYLALLDGLLEAVQNKIRRVYAFTDSELLHDQITFGKKMEMPLLMALRERILELANNFEDFVLKHIPSTDLDQPLHLAKVAIGLVTFPVNGERLLKNCSICCDDKPVPIMIMLKCSHTFCSHCLRAYADGKVQSCQVPVRCPQPGCKYCISVSECRSFLPFTSFESLEKAVSEANIDHSDRIYCPFPNCSVLLDPHECLSARASSSSQSDNSCIECPVCQRFICVDCKVPWHSSMSCVEYQNLPEEERDASDITLHRLAQNKRWKRCQRCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRDGQQACQCAYWDEDNSEDSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01920 515 ProSitePatterns Zinc finger RING-type signature. 218 227 IPR017907 -
Cca08g01920 515 Pfam Reverse transcriptase-like 64 170 IPR002156 GO:0003676|GO:0004523
Cca08g01920 515 SMART ibrneu5 350 409 IPR002867 -
Cca08g01920 515 SMART ibrneu5 268 340 IPR002867 -
Cca08g01920 515 Pfam IBR domain, a half RING-finger domain 279 340 IPR002867 -
Cca08g01920 515 Pfam IBR domain, a half RING-finger domain 360 409 IPR002867 -
Cca08g01920 515 Gene3D - 338 462 - -
Cca08g01920 515 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 514 - -
Cca08g01920 515 SUPERFAMILY RING/U-box 353 417 - -
Cca08g01920 515 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 514 IPR031127 GO:0004842|GO:0016567
Cca08g01920 515 SUPERFAMILY RING/U-box 200 275 - -
Cca08g01920 515 SUPERFAMILY Ribonuclease H-like 68 171 IPR012337 -
Cca08g01920 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 280 IPR013083 -
Cca08g01920 515 ProSiteProfiles TRIAD supradomain profile. 197 415 IPR044066 -
Cca08g01920 515 Gene3D - 55 187 IPR036397 GO:0003676
Cca08g01920 515 ProSiteProfiles Zinc finger RING-type profile. 201 245 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01920 Cca-Chr8 51876358 51882217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01920 25 400 C3H Transcription Factor Family AT2G19610 25.445 2.43e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01920 - - gmx:100783040 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01920 08 51876358 51882217 Cca08g01920 08 51876358 51882217 ECH