Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01918 ATGGAAACCACCGGAGCCGGTAACGACGGAGGACGATTTCCGCAACCGCCACAGGAACCGAATCTAAGACCACAGTGGCAACGCCCAAGTGCCACCGCGCAGGACCTCATTCTGCAACCCGAGTGGCGGCGACAGAGGCCACCCGCTCCTCCCGCGCAGCCTTCCGGTCGCGGCGCCGACGAGGACCTGCTTCTCCAGCCGGAATGGCGCCGCTCGAAGCCTAGCGCCGGTGCCGCCGTGTGGGAGCCTGAATGGAGGCGATCGAGACAGACTCAAACTGCATTTCCGTGGAATCAGAATTTCGGCGTTCGCAAACAGGCCGCGTCGAGTTCCGGTGGCGTTGAAAGGCGCGGAGACCCTAGCGAACGCTCGCGACTTGCTCCGGCTACGGATTCTGTAGTTTCCAAATTGGAAAGACTGCAAATATCAAAACAGTTAACTGCATCAACCTGTACACTTGATAAAAGGGATAGAATTTCTCCTATTCAGAGACCTGACAATGGTGGCACGATTGCGATTTTAACTAGCAGACTTCGTGTCAATCATTTCCCTGTTAAGTTTGATCCAGAGAGTTTAATAATGCATTATAATGTTGTTGTCAAACCTATAGTATCTTCAAAACTTGGCCAGCCTCAGCAATTATCTAAGTCTGATTTATCCATGATCAGACAGAAACTGTTTTCTGATCATCCTGAGAGATTGCCCTTGGAGATGACTGCGCATGATGGCGCAAAAAATATTTATAGTGCAGTACCATTACCAGAAGAGACCTTTACTGTCGATATCTCTGAAGGAGAGGATGAAAAGACCATTTCATATAGTGTTACCTTAACACTTCTTAATAAACTCAGGCTTCACAAGTTAATGGATTATCTTAGTGGGCATAACCTCTCCATTCCTAGGGACATCTTACAAGGGATGGATGTGGTGGTGAAAGAGAATCCAGCTAGACGTACTATTTCTGTCGGACGACACTTCTATCCTACAAATCCTCCTGTAGTAATGAAGGATCTTCACCATGGGGTAATTGCTGTTGGGGGTTTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCTGTATTGGCTTTCCGAAAGCAAATGTCAGTCTTGGATTTCTTGCACTTGCGTATTGATAATTTTAATTTGGATGAATTTGAAAAATTCAGGAAATTCGTTGAGGAGGCACTTATTGGATTGAAAGTTAATGTGACTCATCGAAAATGCAATCGAAAATACATTATTTCAAGATTAACACCTATGATTACAAGGTATGTCACTTTTCCCGTTGACAATACCAGTGGCTGGAGTCCCTCAAAGGATGTTAGTCTTCTTTCCTTTTTTAAAGACAAATATGGCAAGGACATTGTATTAAAAGATATTCCCTGGAAAGACAAGAAGAAAAACTATGTACCCATGGAGTTCTGTGTTTTGGTTGAGGGCCAAAGATATCCCAAAGAGCGTCTGGATAGTATTTCTGCAAATACATTGAAAGCAATGTCACTATCTCACCCAAATGAGAGAGAGTCTGCAATACATAAGATGGTGCAGTCTAGTGATGGACCTTGCGGCGGTGATCTTATTCAAAATTTTGGAATGAGTGTCAACACAACCATGACAACTATTGTAGGACGTGTAATTGGCCCTCCAGAATTGAAGTTAGGTGATCCAAATGGAAAGATAATCAAAGTGACAGTGGATCTGGAGAAATGTCATTGGAATCTTGCTGGAAGATCAATGGTGGAAGGTAAACCAGTTGAGCAATGGGGCATTCTGGATTTCACTAGTTTTGGGCCATATAAGTACAAATTAAGAGGTAAGGAATTCATTCAAAAGCTTATAGGTAAATACCAGAAATTGGGTATATACATGCAGGAGCCCATTTGTTATGAAGAATCTTCAATGAAGATACTTGCCACTTATGATTTGCTATCTGAATTACTTGAAAAAATTAACAATATTTGTAAATATAACCAAGGCCACCTGCAATTTCTTCTCTGTGTAATGGCTAGAAAAAGCCCAGGTTATAAGTACCTCAAGTGGATTTCTGAGACCAAACTTGGGTTAGTGACACAATGCTGCTTGTCTAATAGTGCTAATGAAGGGGAGGACAAATTTTATACTAATCTTGCTCTTAAGATCAATGCCAAGCTTGGAGGCAGTAACGTGGAGCTCAGTAATGGACTTCCTTACTTTGAGGGTGAAGGACATGTTATGTTTTTAGGGGCTGATGTCAATCATCCTGGTTATCGGGACACCAGAAGTCCATCAATTACTGCTGTGGTTGCTACTGTTAATTGGCCTGCTGCAAATCGTTATGCAGCACGTGTTTTCCCACAATACAATCGAAGCGAGAAAATATTGAACTTTGGGGAGGTTTGTCTTGACCTTGTTGCATGTTACAGGAGGATGAATGGAGTTAGGCCAGAAAGAATTGTTATTTTCCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAATGAGGAGCTACTAGATTTGAAGAGAGTATTTCAAAGAGTAAATTACTTTCCAACAATCACTCTCATTGTAGCACAAAAGCGACATCAAACTCGATTTTTCCCAGAGGGTTGGAGGGATGGGTCTTCCAGTGGCAATATCTTGCCAGGAACTATTGTGGACACAAAAGTTACACACCCTTTTGAGTTTGACTTTTACCTTTGTAGTTACTATGGAAACTTGGGTACAAGCAAGCCCACTCATTACCATGTTTTATGGGATGAACACAAGTTTACATCTGATGAATTGCAGAAGCTCATATACGAGATGTGTTTTACCTTTGCAAAGTGCACTAAACCTGTATCTTTAGTTCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATATCATGACGCAAGGATTGGGGTGCAGTCTGTGAAGTCAACATCTTCATCTTCTAAAGATGCTTCATCAGCTTCACGATCAGCTTCATTTGAACAGGGATTTTACACGTTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTAA 3045 0.4246 METTGAGNDGGRFPQPPQEPNLRPQWQRPSATAQDLILQPEWRRQRPPAPPAQPSGRGADEDLLLQPEWRRSKPSAGAAVWEPEWRRSRQTQTAFPWNQNFGVRKQAASSSGGVERRGDPSERSRLAPATDSVVSKLERLQISKQLTASTCTLDKRDRISPIQRPDNGGTIAILTSRLRVNHFPVKFDPESLIMHYNVVVKPIVSSKLGQPQQLSKSDLSMIRQKLFSDHPERLPLEMTAHDGAKNIYSAVPLPEETFTVDISEGEDEKTISYSVTLTLLNKLRLHKLMDYLSGHNLSIPRDILQGMDVVVKENPARRTISVGRHFYPTNPPVVMKDLHHGVIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKQMSVLDFLHLRIDNFNLDEFEKFRKFVEEALIGLKVNVTHRKCNRKYIISRLTPMITRYVTFPVDNTSGWSPSKDVSLLSFFKDKYGKDIVLKDIPWKDKKKNYVPMEFCVLVEGQRYPKERLDSISANTLKAMSLSHPNERESAIHKMVQSSDGPCGGDLIQNFGMSVNTTMTTIVGRVIGPPELKLGDPNGKIIKVTVDLEKCHWNLAGRSMVEGKPVEQWGILDFTSFGPYKYKLRGKEFIQKLIGKYQKLGIYMQEPICYEESSMKILATYDLLSELLEKINNICKYNQGHLQFLLCVMARKSPGYKYLKWISETKLGLVTQCCLSNSANEGEDKFYTNLALKINAKLGGSNVELSNGLPYFEGEGHVMFLGADVNHPGYRDTRSPSITAVVATVNWPAANRYAARVFPQYNRSEKILNFGEVCLDLVACYRRMNGVRPERIVIFRDGVSEYQFDMVLNEELLDLKRVFQRVNYFPTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTIVDTKVTHPFEFDFYLCSYYGNLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHDARIGVQSVKSTSSSSKDASSASRSASFEQGFYTLHADLENIMFFI 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01918 1014 CDD Piwi_ago-like 534 967 IPR045246 -
Cca08g01918 1014 ProSiteProfiles PAZ domain profile. 374 486 IPR003100 GO:0005515
Cca08g01918 1014 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 58 1013 - -
Cca08g01918 1014 SMART DUF1785_2 320 373 IPR014811 -
Cca08g01918 1014 ProSiteProfiles Piwi domain profile. 670 969 IPR003165 GO:0003676
Cca08g01918 1014 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 58 1013 - -
Cca08g01918 1014 Gene3D - 552 732 - -
Cca08g01918 1014 CDD PAZ_argonaute_like 374 485 - -
Cca08g01918 1014 Pfam Piwi domain 671 965 IPR003165 GO:0003676
Cca08g01918 1014 Gene3D - 740 1014 IPR036397 GO:0003676
Cca08g01918 1014 MobiDBLite consensus disorder prediction 86 107 - -
Cca08g01918 1014 Pfam PAZ domain 392 501 IPR003100 GO:0005515
Cca08g01918 1014 Pfam N-terminal domain of argonaute 177 311 IPR032474 -
Cca08g01918 1014 Pfam Argonaute linker 1 domain 321 372 IPR014811 -
Cca08g01918 1014 SUPERFAMILY Ribonuclease H-like 662 969 IPR012337 -
Cca08g01918 1014 SUPERFAMILY PAZ domain 369 524 IPR036085 GO:0005515
Cca08g01918 1014 Gene3D paz domain 368 490 - -
Cca08g01918 1014 SMART PAZ_2_a_3 374 503 IPR003100 GO:0005515
Cca08g01918 1014 MobiDBLite consensus disorder prediction 1 130 - -
Cca08g01918 1014 SMART Piwi_a_2 670 968 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01918 Cca-Chr8 51852464 51857532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01918 178 1013 Eukaryotic Initiation Factors Gene Family AT1G48410 34.155 1.77e-139 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01918 K11593 - gmx:100783571 1737.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01918 08 51852464 51857532 Cca08g01918 08 51852464 51857532 ECH