Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01916 ATGGCTCTTTCAGCCGAACCGTCATCGTCTTTGAGCTTTACATCATCTTCCCATTTATCAAATGGCTCGGTTAGTCACAACATAAGCTCTCCTTATGGCTCTGATGCTGGACCTAACCTTGAGGTTATCAGTTTGAGTAAGCTTAGCTCCAATTTGGAGCAGCTTTTGATTGAGTCTGATTGTGATTATAGTGATGCTGACATCGTTGTGGAAGGTGTTCCGGTTAGTGTTCATCGATGTATTCTGGCCTCCAGGAGTAAGTTTTTTCATGAATTGTTCAAGAGGGAGAAGGGGTCATCAGAAAAAGAAGGGAAATTGAAGTATTGTATGAGTGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCATTCCTCATATTCCTGGGCTATGTATATACTGGTAAACTGAAGCCCTCTCCAATGGAGGTGTCTACATGTGTTGACAATGTGTGTGCCCATGATGCTTGTAGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGCGACGTCTACTTAACTTTGTTGGAAAGGCTCTAGTGGAAGATGTCATCCCAATCCTCACCGTTGCTTTCCATTGTCAACTGAGTCACCTTGCCACTCAATGTATTGACAGGGTGGCCAGATCAGACCTTGACCAGATTTCAATTGAAAAAGAACTTCCTCATGAACTCTCACAAAAAGTTAAATTGCTCCGCCGCAAACCTCAGCAAGAAGTTGAAAATGATGCTTCTGCAGCAGATGCTTTGTCTCTAAAACGAATCACTAGAATACACAAGGCATTGGACTCAGATGATGTTGAGCTTGTTAAACTTCTTTTGAATGAGTCGGACATTACTTTAGATGAGGCCAGTGCACTCCATTATGCTGCAGCCTACTGTGACCCCAAGGTTGTTTCTGAGGTGCTTGGTTTGGGTCTGGCTAATGTCAATCTTCGAAATTCTCGGGGGTACACAGTGCTTCACATGGCTGCCATGCGTAAAGAGCCTTCCATTATAGTATCCCTGCTTACAAAAGGGGCTTGTGCATCAGATTTGACTTTTGATGGTCAGAGTGCTGTTAGTATTTGTAGGAGATTGACAAGGCCAAAGGATTACCATGTAAAAACAGAACAGGGGAAAGAAACGAATAAAGATCGGATATGCATCGATGTTCTTGAAAGAGAAATGCGGAGGAATCCATTGGCGGGGGATGCTTCTATGTCTTCTCATACCATGGCTGATGATCTCCACATGAAGCTACTATACCTAGAGAACAGAGTGGCATTTGCAAGACTTTTCTTCCCTTCAGAAGCCAAATTAGCAATGGACATTGCACATGCTGAGACAACATCCGAGTTTGCTGGTCTTTCTGCATCTAAAGGTTCAAATGGCAACTTAAGGGAGGTTGATCTCAATGAGACTCCCATTGTACAAAACAAAAGACTTCTTTCTAGGATGGAAGCCCTCATGAAAACTGTGGAGATGGGGCGGCGATACTTCCCGCTCTGCTCGGAAGTGCTGGACAAGTTCATGGAAGATGACCTGCCTGACTTGTTCTACCTGGAAAAGGGGACTCAAGAAGAGCAGAGAATCAAAAGGGCACGTTTCATGGAGCTTAAAGATGATGTCCACAAGGCTTTCAGCAAGGACAAGGCCGATTTTAGCCGCTCAGGGATTTCATCTTCGTCATCCTCATCATCCCTCAGAGACTCTGTTGTACATTACAAGGCTAGGAAAGTGCAACAATAA 1773 0.4377 MALSAEPSSSLSFTSSSHLSNGSVSHNISSPYGSDAGPNLEVISLSKLSSNLEQLLIESDCDYSDADIVVEGVPVSVHRCILASRSKFFHELFKREKGSSEKEGKLKYCMSDLLPYGKVGYEAFLIFLGYVYTGKLKPSPMEVSTCVDNVCAHDACRPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVIPILTVAFHCQLSHLATQCIDRVARSDLDQISIEKELPHELSQKVKLLRRKPQQEVENDASAADALSLKRITRIHKALDSDDVELVKLLLNESDITLDEASALHYAAAYCDPKVVSEVLGLGLANVNLRNSRGYTVLHMAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHVKTEQGKETNKDRICIDVLEREMRRNPLAGDASMSSHTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSASKGSNGNLREVDLNETPIVQNKRLLSRMEALMKTVEMGRRYFPLCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRARFMELKDDVHKAFSKDKADFSRSGISSSSSSSSLRDSVVHYKARKVQQ 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01916 590 MobiDBLite consensus disorder prediction 559 590 - -
Cca08g01916 590 SUPERFAMILY Ankyrin repeat 260 373 IPR036770 -
Cca08g01916 590 Pfam Domain of unknown function (DUF3420) 225 273 IPR024228 -
Cca08g01916 590 Pfam NPR1/NIM1 like defence protein C terminal 372 574 IPR021094 -
Cca08g01916 590 SUPERFAMILY POZ domain 52 188 IPR011333 -
Cca08g01916 590 PANTHER REGULATORY PROTEIN NPR3 10 575 - -
Cca08g01916 590 Gene3D Potassium Channel Kv1.1; Chain A 39 222 IPR011333 -
Cca08g01916 590 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
Cca08g01916 590 SMART BTB_4 64 190 IPR000210 GO:0005515
Cca08g01916 590 MobiDBLite consensus disorder prediction 562 579 - -
Cca08g01916 590 PANTHER REGULATORY PROTEIN NPR3 10 575 IPR044292 GO:0009862|GO:2000022|GO:2000031
Cca08g01916 590 SMART ANK_2a 267 295 IPR002110 GO:0005515
Cca08g01916 590 SMART ANK_2a 330 362 IPR002110 GO:0005515
Cca08g01916 590 SMART ANK_2a 296 326 IPR002110 GO:0005515
Cca08g01916 590 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Cca08g01916 590 CDD BTB_POZ_NPR_plant 47 190 - -
Cca08g01916 590 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Cca08g01916 590 Gene3D - 264 404 IPR036770 -
Cca08g01916 590 Pfam Ankyrin repeats (many copies) 299 344 IPR002110 GO:0005515
Cca08g01916 590 Pfam BTB/POZ domain 62 179 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01916 Cca-Chr8 51822341 51827894 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca08g01916 NPR1_like_C 1.1e-96 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01916 K14508 - gmx:100217338 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01916 08 51822341 51827894 Cca08g01916 08 51822341 51827894 ECH