Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01907 ATGAAGGAAGGTGGTGGTAGGAAACAGGGTGCAGCCTCACCCTGTGCTGCATGCAAGCTTCTCAGGAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCATATTTCCCATCGGATGAACCCCAAAAGTTTGCAAATGTGCACAAAGTGTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACCTACCAATGCATCAACGAGGGGATGCAGTGAGCAGCATGGTGTATGAAGCGAATGCGAGAGTCCGAGACCCTGTTTATGGGTGCGTTGGGGCCATCTCTTCGCTCCAGCAACAGATTGATGTGCTACAGACCCAATTGGCCCTGGCCCAGGCTGAGGTGGCCCACCTTCGGCTCAGACAAAACAGATGTTTTTCCAATCATGGGCTTAGGCCCACAAGCCCAACCGACAAGTCTATTTTTGACATGGACATGGCGGTGGACCAGGCCAGCTACGGTGGTTCAATGTGGTCATGA 477 0.5157 MKEGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPSDEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVAHLRLRQNRCFSNHGLRPTSPTDKSIFDMDMAVDQASYGGSMWS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01907 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 130 - -
Cca08g01907 158 Coils Coil 93 120 - -
Cca08g01907 158 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Cca08g01907 158 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Cca08g01907 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01907 Cca-Chr8 51697137 51702291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01907 1 158 AS2 family AT1G31320 74.419 9.06e-79 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca08g01907 LOB 1.6e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01907 - - gmx:100794219 298.901