Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01899 ATGGAGGATTCAGAGGGCGTTCTCAGCTTCGATTTCGAGGGCGGCCTcgacgccgcgccctccgccgccgccgcagcctccgCTGCGCCCTCCAACGCCGACCCCTCCGCTGCCAACGTCCCCGGCCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTGCGCAGCCTGTGCATGAAGGGCGACGCGTGCGGGTTCCTGCACCAGTACGACAAGGCGCGGATGCCGGTGTGCAGGTTCTTTAGGCTCTATGGGGAGTGCCGAGAACAGGATTGCGTGTATAAGCACACCAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATACTCCTACAATTATAATTCATCTAATAAGTTTTTCCAACAAAGGGGTTCTAATTATAATCAACAAGCTGAAAAATCCCAGCTTCCTCAAGGAAATAATTCTACAAACCAAGGGGTGACAGGAAAACCATTACCAGCAGAGTCGGGAAATGCCCAGCCACAGCAACAAGTTCAACAGTCTCAGCAGCCAGTCAGCCAGAGCCAAATGCAAAATCCTGCTAATGGCCAGCCTAATCAAGCCAATAGAACTGCAACCCCCTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGGGAAAATTTGGAGTTATCTGTACAACAAGGGGTATGGGCCACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCCGTGGAAAATGTGATATTAATTTTTTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTATCATTCCACAAAACACGTCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCTTCTATTGGAGAGCAGCTGGCATCGTTGCTTTATCTTGAGCCGGATAGTGAACTTATGGCTATCTCGATTGCAGCTGAGTCTAAACGAGAAGAAGAGAAAGCGAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTCCCATTTgaagacaatgaagaagaggaagaggaagaaagtgacgaagaagaggaGAGCTTTGGTCATGGTGTTGGGCCAGCTGGTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCACCTCATATGCCTCTTGGGCGCGGAGCCCGACCCATGCCTGGAATGCAGGGCTTTAACCCTGTAATGATGGGTGATGGGCTATCCTATGGACCTGTTGCACCTGATGGTTTTGGTATGCCAGATCTTTTTGGGGTGGGACCCCGTGGTTTTGCTCCGTATGGTCCTAGATTCTCTGGTGACTTTGGAGGTCCCCCAGCAGCCATGATGTTCCGTGGGCGACCCTCTCAACCGGGGATGTTTCCAGGCGGTGGGTTTGGGATGATGATGAATCCTGGACGTGGTCCCTTCATGGGGGGAATGGGAGTTGCAGGTGCAAATCCACCAAGAGGTGGTAGGCCAGTTAATATGCCTCCAATGTTTCCACCACCTCCACCCCTACCTCAGAATGCAAACCGTGTTGCCAAAAGAGATCCAAGAGCCACTGATCGAAATGATAGGTATGGTTCAGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGCACCGGATGATGAAATGCAGTATCAGCAAGGATACAAAGGGAACCAGGATGATCATCCTGCTGCGAACAACTTCAAGAATGATGACAGTGAAAGTGAGGATGAGGCACCTAGGCGATCCAGACATGGGGAGGGGAAAAAGAAAAGGCGAGGCACAGAAGATGATGAATATGATAATTTAGTAGGCTTGGTGAACGTACACTTATGTATTTGTAAAGGGATCGTAACACTTGAGTTCTCAATTAAAAAGAGTTCTGTGGAAATTTCTCTCAAATCCAAGGAGAGGAATCGGAGGTAA 2136 0.4607 MEDSEGVLSFDFEGGLDAAPSAAAAASAAPSNADPSAANVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGSNYNQQAEKSQLPQGNNSTNQGVTGKPLPAESGNAQPQQQVQQSQQPVSQSQMQNPANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPMPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRGFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLPQNANRVAKRDPRATDRNDRYGSGSEQGKSQDMLSQSGAPDDEMQYQQGYKGNQDDHPAANNFKNDDSESEDEAPRRSRHGEGKKKRRGTEDDEYDNLVGLVNVHLCICKGIVTLEFSIKKSSVEISLKSKERNRR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01899 711 MobiDBLite consensus disorder prediction 409 427 - -
Cca08g01899 711 MobiDBLite consensus disorder prediction 160 230 - -
Cca08g01899 711 MobiDBLite consensus disorder prediction 387 448 - -
Cca08g01899 711 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
Cca08g01899 711 MobiDBLite consensus disorder prediction 584 598 - -
Cca08g01899 711 MobiDBLite consensus disorder prediction 550 671 - -
Cca08g01899 711 Gene3D ph1033 like domains 215 373 - -
Cca08g01899 711 SMART c3hfinal6 73 99 IPR000571 GO:0046872
Cca08g01899 711 SMART c3hfinal6 45 71 IPR000571 GO:0046872
Cca08g01899 711 SMART c3hfinal6 101 125 IPR000571 GO:0046872
Cca08g01899 711 MobiDBLite consensus disorder prediction 599 634 - -
Cca08g01899 711 MobiDBLite consensus disorder prediction 635 670 - -
Cca08g01899 711 SUPERFAMILY CCCH zinc finger 45 76 IPR036855 GO:0046872
Cca08g01899 711 MobiDBLite consensus disorder prediction 560 578 - -
Cca08g01899 711 ProSiteProfiles YTH domain profile. 235 370 IPR007275 GO:0003723
Cca08g01899 711 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 664 - -
Cca08g01899 711 Gene3D - 39 103 - -
Cca08g01899 711 ProSiteProfiles Zinc finger C3H1-type profile. 45 72 IPR000571 GO:0046872
Cca08g01899 711 Pfam YT521-B-like domain 235 297 IPR007275 GO:0003723
Cca08g01899 711 Pfam YT521-B-like domain 314 369 IPR007275 GO:0003723
Cca08g01899 711 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 664 IPR045168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01899 Cca-Chr8 51589800 51608467 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca08g01899 YTH 3.9e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01899 K14404 - gmx:100802826 1141.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01899 08 51589800 51608467 Cca08g01899 08 51589800 51608467 ECH