Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca08g01899 | ATGGAGGATTCAGAGGGCGTTCTCAGCTTCGATTTCGAGGGCGGCCTcgacgccgcgccctccgccgccgccgcagcctccgCTGCGCCCTCCAACGCCGACCCCTCCGCTGCCAACGTCCCCGGCCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTGCGCAGCCTGTGCATGAAGGGCGACGCGTGCGGGTTCCTGCACCAGTACGACAAGGCGCGGATGCCGGTGTGCAGGTTCTTTAGGCTCTATGGGGAGTGCCGAGAACAGGATTGCGTGTATAAGCACACCAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATACTCCTACAATTATAATTCATCTAATAAGTTTTTCCAACAAAGGGGTTCTAATTATAATCAACAAGCTGAAAAATCCCAGCTTCCTCAAGGAAATAATTCTACAAACCAAGGGGTGACAGGAAAACCATTACCAGCAGAGTCGGGAAATGCCCAGCCACAGCAACAAGTTCAACAGTCTCAGCAGCCAGTCAGCCAGAGCCAAATGCAAAATCCTGCTAATGGCCAGCCTAATCAAGCCAATAGAACTGCAACCCCCTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGGGAAAATTTGGAGTTATCTGTACAACAAGGGGTATGGGCCACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCCGTGGAAAATGTGATATTAATTTTTTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTATCATTCCACAAAACACGTCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCTTCTATTGGAGAGCAGCTGGCATCGTTGCTTTATCTTGAGCCGGATAGTGAACTTATGGCTATCTCGATTGCAGCTGAGTCTAAACGAGAAGAAGAGAAAGCGAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTCCCATTTgaagacaatgaagaagaggaagaggaagaaagtgacgaagaagaggaGAGCTTTGGTCATGGTGTTGGGCCAGCTGGTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCACCTCATATGCCTCTTGGGCGCGGAGCCCGACCCATGCCTGGAATGCAGGGCTTTAACCCTGTAATGATGGGTGATGGGCTATCCTATGGACCTGTTGCACCTGATGGTTTTGGTATGCCAGATCTTTTTGGGGTGGGACCCCGTGGTTTTGCTCCGTATGGTCCTAGATTCTCTGGTGACTTTGGAGGTCCCCCAGCAGCCATGATGTTCCGTGGGCGACCCTCTCAACCGGGGATGTTTCCAGGCGGTGGGTTTGGGATGATGATGAATCCTGGACGTGGTCCCTTCATGGGGGGAATGGGAGTTGCAGGTGCAAATCCACCAAGAGGTGGTAGGCCAGTTAATATGCCTCCAATGTTTCCACCACCTCCACCCCTACCTCAGAATGCAAACCGTGTTGCCAAAAGAGATCCAAGAGCCACTGATCGAAATGATAGGTATGGTTCAGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGCACCGGATGATGAAATGCAGTATCAGCAAGGATACAAAGGGAACCAGGATGATCATCCTGCTGCGAACAACTTCAAGAATGATGACAGTGAAAGTGAGGATGAGGCACCTAGGCGATCCAGACATGGGGAGGGGAAAAAGAAAAGGCGAGGCACAGAAGATGATGAATATGATAATTTAGTAGGCTTGGTGAACGTACACTTATGTATTTGTAAAGGGATCGTAACACTTGAGTTCTCAATTAAAAAGAGTTCTGTGGAAATTTCTCTCAAATCCAAGGAGAGGAATCGGAGGTAA | 2136 | 0.4607 | MEDSEGVLSFDFEGGLDAAPSAAAAASAAPSNADPSAANVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGSNYNQQAEKSQLPQGNNSTNQGVTGKPLPAESGNAQPQQQVQQSQQPVSQSQMQNPANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPMPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRGFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLPQNANRVAKRDPRATDRNDRYGSGSEQGKSQDMLSQSGAPDDEMQYQQGYKGNQDDHPAANNFKNDDSESEDEAPRRSRHGEGKKKRRGTEDDEYDNLVGLVNVHLCICKGIVTLEFSIKKSSVEISLKSKERNRR | 711 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca08g01899 | 711 | MobiDBLite | consensus disorder prediction | 409 | 427 | - | - | |
Cca08g01899 | 711 | MobiDBLite | consensus disorder prediction | 160 | 230 | - | - | |
Cca08g01899 | 711 | MobiDBLite | consensus disorder prediction | 387 | 448 | - | - | |
Cca08g01899 | 711 | ProSiteProfiles | Zinc finger C3H1-type profile. | 99 | 126 | IPR000571 | GO:0046872 | |
Cca08g01899 | 711 | MobiDBLite | consensus disorder prediction | 584 | 598 | - | - | |
Cca08g01899 | 711 | MobiDBLite | consensus disorder prediction | 550 | 671 | - | - | |
Cca08g01899 | 711 | Gene3D | ph1033 like domains | 215 | 373 | - | - | |
Cca08g01899 | 711 | SMART | c3hfinal6 | 73 | 99 | IPR000571 | GO:0046872 | |
Cca08g01899 | 711 | SMART | c3hfinal6 | 45 | 71 | IPR000571 | GO:0046872 | |
Cca08g01899 | 711 | SMART | c3hfinal6 | 101 | 125 | IPR000571 | GO:0046872 | |
Cca08g01899 | 711 | MobiDBLite | consensus disorder prediction | 599 | 634 | - | - | |
Cca08g01899 | 711 | MobiDBLite | consensus disorder prediction | 635 | 670 | - | - | |
Cca08g01899 | 711 | SUPERFAMILY | CCCH zinc finger | 45 | 76 | IPR036855 | GO:0046872 | |
Cca08g01899 | 711 | MobiDBLite | consensus disorder prediction | 560 | 578 | - | - | |
Cca08g01899 | 711 | ProSiteProfiles | YTH domain profile. | 235 | 370 | IPR007275 | GO:0003723 | |
Cca08g01899 | 711 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 | 1 | 664 | - | - | |
Cca08g01899 | 711 | Gene3D | - | 39 | 103 | - | - | |
Cca08g01899 | 711 | ProSiteProfiles | Zinc finger C3H1-type profile. | 45 | 72 | IPR000571 | GO:0046872 | |
Cca08g01899 | 711 | Pfam | YT521-B-like domain | 235 | 297 | IPR007275 | GO:0003723 | |
Cca08g01899 | 711 | Pfam | YT521-B-like domain | 314 | 369 | IPR007275 | GO:0003723 | |
Cca08g01899 | 711 | PANTHER | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING | 1 | 664 | IPR045168 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca08g01899 | Cca-Chr8 | 51589800 | 51608467 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Cca08g01899 | YTH | 3.9e-45 | CL0178 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca08g01899 | K14404 | - | gmx:100802826 | 1141.33 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca08g01899 | 08 | 51589800 | 51608467 | Cca08g01899 | 08 | 51589800 | 51608467 | ECH |