Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01898 ATGGGTTTGATGCGTGTAGTAGTAGTGGCAGTGTGGTGTGCAGTATTTGTGATGCATGCAGAGTTTCCAGTCTCTAATGGTGAGCTGAGTTCTACGTTCTACAATGAAACATGTCCACTGCTATACGACACTGTGTATGGAGTCATCTACGATGCTTCCCTCACTGATACCCGCATCGGTGCCAGCCTCATCAGGCTTCATTTTCATGATTGCTTTGTTCAAGGTTGTGATGCATCAGTTTTACTGAACAACACTGCTACAATAGAAAGCGAGCAAGATGCAACTCCAAATAACAACTCACTAAGGGGCTTGGACGTTGTCAATAACATCAAGACAGCACTGGAAAATATTTGTCCAGCCACTGTTTCATGTGCTGATATTCTTGCTATTGCTGCTGAAGTAGGTTCTGCTCTGGGTGGAGGTCCATCATGGTCAGTTCTATTAGGAAGAAGAGATAGCTTAACAGCAAACAGAACCCTTGCAAATTTAAACCTTCCAGCACCCTCTTCCACAGTGGATGAACTTATAGAAAACTTTGCTAATCAAGGTCTCAACACCACAGATTTAGTTGCACTCTCAGGTGCTCATACGTTTGGAAGAGCTACGTGCAGTACATTCGATGATCGATTATACGATTTCAATGGCACTGGAAGTCCTGATCCAACTCTGGATACAACTTACTTAGAATTATTGAGTGAGATATGCCCCCAGGATGCAACTGTGGATAACCTCACCAATTTGGACCTTACCACACCTAATGAATTTGATAACAAATACTACTCCAATCTTCAGAATCTCAATGGCTTACTTCAGAGCGACCAAGAACTGTTCTCCACTTCTGATGCTGATACCATTGCCCTTGTCAATAGCTTCAGCAGTGACCAAAGTGTTTTCTTTGCCAACTTTATAGTGTCAATGATAAAAATGGGTGATATTGGAGTGCTGGAGGGTGATGAAGGACAAATTCGCTTGCAATGGTTTTCAGTCTCTAATGCTGAACTGAGTCCTACTTTCTACAGCCAAACATGTCCACTGCTACAAACTACTGTTTTTGGAGTCATCTTCCGTGCTTACCTTACTGATCCTCGCATCGGTGCCAGCCTCGTTAGGCTTCATTTTCATGATTGCTTTGTCCAAGGTTGCGATGGATCAATTTTACTAAACAACACAGCTACCATAGAAAGCGAGCAAGATGCAATTCCAAATAACAACTCAATAAGGGGCTTGGACGTTGTCAATAACATCAAAACAGCGGTTGAAATTATTTGTCCAGCTACAGTTTCTTGTGCTGATATTCTTGCTATTGCAGCTGAAGTAGGTTCTGTTCTGGGAGGAGGTCCATCATGGTCAGTTCCATTAGGAAGAAGGGATAGCTTAACAGCAAACAGAACCCTTGCAAATCAAAACCTTCCAGCACCCTTCTTCACACTAGATCAACTCAAAGCTGCCTTTGCTGTTCAAGGTCTAAACACCACTGATTTAGTTGCACTCTCAGGTGCTCATACATTTGGAAGAGCTCATTGCAGTACATTCATTAGCCGATTATACAACTTCAACAACACTGGAAATCCTGATCCAACTCTGAACTCAACTTTCTTACAAATATTGCGTGAGATATGCCCCCAGAATGCAACTAATAATAACCTCACCAATTTGGACCTGACCACACCTGATCGTTTTGATAACAAATACTACTCCAATCTTCAGCACCTCAATGGCTTACTTCAGAGCGACCAAGAACTGTTCTCCACTCCTGGTGCTGATACCATTGCCCTTGTCAATAGCTTCAGTAGTAACCAAAGTCTTTTCTTTTCCAACTTTATAGTGTCAATGATAAAAATGGGTAACATTGGAGTGTTGGAAGGGACTAAAGGAGAAATTCGCTTGCAATGTAATTTTGTTAATGGAGACTCCTCTGGATTAGGTAGTGTGGTATCCAAAGATTCTAAGGATAATCTGATT 1962 0.42 MGLMRVVVVAVWCAVFVMHAEFPVSNGELSSTFYNETCPLLYDTVYGVIYDASLTDTRIGASLIRLHFHDCFVQGCDASVLLNNTATIESEQDATPNNNSLRGLDVVNNIKTALENICPATVSCADILAIAAEVGSALGGGPSWSVLLGRRDSLTANRTLANLNLPAPSSTVDELIENFANQGLNTTDLVALSGAHTFGRATCSTFDDRLYDFNGTGSPDPTLDTTYLELLSEICPQDATVDNLTNLDLTTPNEFDNKYYSNLQNLNGLLQSDQELFSTSDADTIALVNSFSSDQSVFFANFIVSMIKMGDIGVLEGDEGQIRLQWFSVSNAELSPTFYSQTCPLLQTTVFGVIFRAYLTDPRIGASLVRLHFHDCFVQGCDGSILLNNTATIESEQDAIPNNNSIRGLDVVNNIKTAVEIICPATVSCADILAIAAEVGSVLGGGPSWSVPLGRRDSLTANRTLANQNLPAPFFTLDQLKAAFAVQGLNTTDLVALSGAHTFGRAHCSTFISRLYNFNNTGNPDPTLNSTFLQILREICPQNATNNNLTNLDLTTPDRFDNKYYSNLQHLNGLLQSDQELFSTPGADTIALVNSFSSNQSLFFSNFIVSMIKMGNIGVLEGTKGEIRLQCNFVNGDSSGLGSVVSKDSKDNLI 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01898 654 CDD secretory_peroxidase 333 634 IPR033905 GO:0004601|GO:0042744
Cca08g01898 654 ProSitePatterns Peroxidases active site signature. 365 376 IPR019794 GO:0004601
Cca08g01898 654 SUPERFAMILY Heme-dependent peroxidases 334 635 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Cca08g01898 654 Gene3D - 33 325 - -
Cca08g01898 654 CDD secretory_peroxidase 28 325 IPR033905 GO:0004601|GO:0042744
Cca08g01898 654 PRINTS Plant peroxidase signature 445 460 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Plant peroxidase signature 492 504 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Plant peroxidase signature 343 362 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Plant peroxidase signature 407 420 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Plant peroxidase signature 551 566 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Plant peroxidase signature 426 436 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Plant peroxidase signature 609 622 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Plant peroxidase signature 367 387 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Plant peroxidase signature 567 584 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 Pfam Peroxidase 356 598 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 Pfam Peroxidase 52 293 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 Gene3D - 338 635 - -
Cca08g01898 654 ProSiteProfiles Plant heme peroxidase family profile. 28 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Haem peroxidase superfamily signature 445 457 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Haem peroxidase superfamily signature 493 508 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Haem peroxidase superfamily signature 365 379 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Haem peroxidase superfamily signature 427 444 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PRINTS Haem peroxidase superfamily signature 553 568 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 Pfam von Willebrand factor type D domain 197 343 IPR001846 -
Cca08g01898 654 ProSiteProfiles Plant heme peroxidase family profile. 333 635 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 Gene3D Peroxidase, domain 2 166 309 - -
Cca08g01898 654 Gene3D Peroxidase, domain 2 471 614 - -
Cca08g01898 654 PANTHER PEROXIDASE 7 327 - -
Cca08g01898 654 PANTHER PEROXIDASE 331 643 - -
Cca08g01898 654 PANTHER PEROXIDASE 72-RELATED 7 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 PANTHER PEROXIDASE 72-RELATED 331 643 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01898 654 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Cca08g01898 654 ProSitePatterns Peroxidases proximal heme-ligand signature. 493 503 IPR019793 -
Cca08g01898 654 SUPERFAMILY Heme-dependent peroxidases 29 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01898 Cca-Chr8 51567752 51580081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01898 327 639 Peroxidase AT5G06730 60.383 2.73e-132 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01898 K00430 - aprc:113852209 527.324