Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01896 ATGAGGGGTTTCTTCCATGTCACAGTGTGTTGTATGGTTGTGGTGCTTGGAGTGCTACCACTCTCCTTAGATGCACAACTTGATCCTTCCTTTTACAAGAAAACTTGTCCCAACGTTCACTCCATTGTTCGCCAAGTCGTGAGTAGCGTTGCTCAGAAAGATCCTCGTATGCTTGCTAGTCTCGTTAGACTTCACTTTCACGACTGTTTTGTTCAAGGCTGTGACGCATCAATTTTGTTGAACAACACTGCCACAATAGTGAGCGAGCAAGAAGCTTTCCCAAACAACAACTCAATCAGAGGTTTGGATGTTGTGAACCAGATCAAGACAGCAGTGGAAAATGCTTGCCCCGGCGTCGTTTCTTGTGCTGATATTCTTACCCTTGCAGCTGAAATTTCTTCTGTTCTGGCTGGTGGTCCTGATTGGAAAGTTCCCTTGGGAAGAAGGGATAGTTTAACAGCAAACAGAACCCTTGCCAATCAAAATCTTCCAGCTCCATTCTTCAACCTCACTCAGCTTAAAGCAGCCTTTGTTGCTCAAGGTCTCAACACTACTGATCTAGTTGCACTCTCAGGTGCTCATACATTTGGCAGATCTCACTGCGCTTTCTTTACTGACCGATTGTACAATTTTAGTGGTTCTGGAAAACCTGATCCAACTCTTGACACAACTTACTTGCAACAATTGCAAAAAACATGCCCCAATGGTGGACCTAACAACCTTGCCAATTTTGATCCAACCACTCCTGATACATTCGACAAGAACTACTACTCCAACCTTCAAGTTAAGAAGGGCTTGCTTCAGAGTGACCAAGAGCTATTTTCCACAACTGGTGCTGATACAATCAGCATTGTTAACAAGTTCAGTAGTGACCAAAAAGCTTTCTTTGACAGCTTTGAGGCTTCAATGATTAAAATGGGCAATATTGGTGTGCTAACTGGGACCAAAGGAGAAATTAGAAAACAATGTAATTTTGTTAACAAGAAATCTGCTGAACTTGATATTGCTAGTGTGGCCTCCCGAGAATCATCACAGGAGGGTAGCGTTAGCTCCATCTAA 1059 0.4325 MRGFFHVTVCCMVVVLGVLPLSLDAQLDPSFYKKTCPNVHSIVRQVVSSVAQKDPRMLASLVRLHFHDCFVQGCDASILLNNTATIVSEQEAFPNNNSIRGLDVVNQIKTAVENACPGVVSCADILTLAAEISSVLAGGPDWKVPLGRRDSLTANRTLANQNLPAPFFNLTQLKAAFVAQGLNTTDLVALSGAHTFGRSHCAFFTDRLYNFSGSGKPDPTLDTTYLQQLQKTCPNGGPNNLANFDPTTPDTFDKNYYSNLQVKKGLLQSDQELFSTTGADTISIVNKFSSDQKAFFDSFEASMIKMGNIGVLTGTKGEIRKQCNFVNKKSAELDIASVASRESSQEGSVSSI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01896 352 PANTHER PEROXIDASE FAMILY PROTEIN 6 337 - -
Cca08g01896 352 CDD secretory_peroxidase 26 326 IPR033905 GO:0004601|GO:0042744
Cca08g01896 352 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 Gene3D - 31 327 - -
Cca08g01896 352 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cca08g01896 352 Pfam Peroxidase 43 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PANTHER PEROXIDASE 72-RELATED 6 337 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 SUPERFAMILY Heme-dependent peroxidases 26 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 ProSiteProfiles Plant heme peroxidase family profile. 26 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 Gene3D Peroxidase, domain 2 164 306 - -
Cca08g01896 352 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01896 352 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01896 Cca-Chr8 51538434 51540614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01896 3 338 Peroxidase AT5G06730 54.896 9.60e-135 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01896 K00430 - gmx:547499 579.326