Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01889 ATGGCACTTTCTATGCACAAGGACTCAGGCAACAACCAGATGGATTCAAGCAAGTATGTGAGGTACACACCTGAGCAGGTTGAGGCTTTGGAGAGGGTTTATGCTGAATGTCCAAAGCCTAGTTCTTTGAGGAGGCAGCAACTCATCAGAGAGTGCCCCATCCTTTCCAATATTGAACCAAAACAGATCAAAGTTTGGTTCCAGAATAGAAGATGCCGTGAGAAGCAGAGGAAGGAAGCTTCTCGGCTGCAGACAGTGAACAGAAAGCTGACTGCAATGAACAAACTCTTGATGGAAGAGAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTTTATGAGAATGGATATATGAAGCAACAGATACAGACTGCTTCTGCTGGTACCACCACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGAATCAACAGCAAAACCCAACACCTCAGCATCCCCATAGGGATGCTAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAAAGGGGTGGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAGCCCACTAAGGTTGCTGAAATTCTTAAAGATCGGCAGTCGTGGTATCGTGACTGCCGATGCGTGGATGTGTTGAGTATAGTCCCCACAGGGAATGGTGGCACCATTGAGCTGATGTACATGCAGACATATGCGCCCACAACATTGGCAGCAGCGCGGGACTTCTGGACATTAAGATACACTACAAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCATTGACTTCCTCAACTGGTGGTCCCACAGGGCCTCCATCAACTACCTTTATAAGAGCTGAAGTACTTCCTAGTGGTTTTCTAATTAGACCGTGTGAAGGTGGTGGATCCATTATTCATATTGTTGATCATATTGATTTAGATGTCTGGAGTGTCCCTGAAGTCCTGAGACCCCTCTATGAATCATCAAAAATCTTGGCTCAGAAATTGACCATTGCTGCTTTGCAACATATAAGACAGATAGCACAAGAATCAAGTGGAGAAATTCAGTATGGTGGGGGACGCCAGCCTGCTGTCTTGAGAACATTTAGTCAGAGACTTTGCAGGGGATTTAATGATGCTGTGAATGGGTTTGTGGATGATGGTTGGTCCCTAATGGGTACTGATGGGGTGGAAGATGTGACTATAGCCATAAACTCATCTCCAAACAAATTTTTGGGTTCCAACTACAATGCATCAATGTTCCCAGCATTTGGAGGTGGTGTCTTGTGTGCCAAGGCATCAATGCTCCTGCAGAATGTTCCTCCTCCTTTACTTGTTCGATTTTTGAGGGAGCATCGATCAGAGTGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATGCCTTAAAGCTAGTCCCTATGCAGTCCCTTGTGCAAGACCTGGTGGCTTCCCCAGTAGCCAGGTCATTTTGCCCCTTGCTCACACTATTGAGCATGAAGAGTTCCTTGAGGTAGTTCGCATAGAGGGTCATGCATTCTCTCCTGAGGACGTAGCATTGGCACGTGATATGTATCTATTGCAGCTTTGCAGTGGAGTTGATGAAAATGCGATTGGGGCATGTGCTCAACTTGTGTTTGCACCTATTGACGAGTCTTTTGCAGATGATGCTCTTTTACTACCATCTGGTTTTCGTGTTATTCCATTGGATCCTAAATCAGATGGTCCAGCTGCGACTAGGACATTAGATTTGGCATCAACGATGGAAGTAGGATCTGGTAATGCTCGTCCAGCTGGTGAAGCTGATTTGAATGGTTACAACCTTAGGTCTGTCCTTACGATCGCTTTCCAATTCACCTTTGAAAATCATACACGGGACAATGTGGCTGCTATGGCTCGCCAATATGTGCGTAGTGTTGTGGGATCTGTTCAGAGGGTTGCTATGGCAATTGCTCCCTCCAGGCTCTGTAGTCAGCTGGGGCCAAAGTCACTTCCTGGTTCGCCCGAGGCCCTTACTTTAGCTCGATGGATCTGTAGAAGTTACAGGATCCACACTGGTACGGAGATTTTTAGAGCCGAGTCCACAGCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCCGATGCAATCATGTGCTGTTCTGTGAAAACAAACGCATCGCCAGTGTTCACCTTTGCAAACCAGGCTGGATTGGACATGCTTGAAACTACCTTGGTCGCCCTTCAAGATATAATGCTTGATAAAGTTCTTGATGAATCTGGCAGGAAGATTCTGTGCTCTGAGTTCTCCAAGATAATGCAACAGGGTTTTGCATATCTGCCAGCAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGGAATATGTGTATCAAGTATGA 2553 0.4481 MALSMHKDSGNNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIQTASAGTTTDNSCESVVMSGQNQQQNPTPQHPHRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCKGVAARACGLVSLEPTKVAEILKDRQSWYRDCRCVDVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPSTTFIRAEVLPSGFLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGTDGVEDVTIAINSSPNKFLGSNYNASMFPAFGGGVLCAKASMLLQNVPPPLLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPAATRTLDLASTMEVGSGNARPAGEADLNGYNLRSVLTIAFQFTFENHTRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLCSQLGPKSLPGSPEALTLARWICRSYRIHTGTEIFRAESTAGDAILKQLWHHSDAIMCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKILCSEFSKIMQQGFAYLPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEYVYQV 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01889 850 CDD homeodomain 18 78 IPR001356 GO:0003677
Cca08g01889 850 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Cca08g01889 850 Gene3D - 9 84 - -
Cca08g01889 850 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 808 IPR044830 GO:0003700
Cca08g01889 850 MobiDBLite consensus disorder prediction 1 20 - -
Cca08g01889 850 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX32 14 808 - -
Cca08g01889 850 Pfam MEKHLA domain 701 807 IPR013978 -
Cca08g01889 850 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Cca08g01889 850 Coils Coil 844 845 - -
Cca08g01889 850 CDD bZIP 70 109 - -
Cca08g01889 850 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cca08g01889 850 Pfam START domain 167 374 IPR002913 GO:0008289
Cca08g01889 850 Coils Coil 87 107 - -
Cca08g01889 850 MobiDBLite consensus disorder prediction 128 155 - -
Cca08g01889 850 SMART HOX_1 15 81 IPR001356 GO:0003677
Cca08g01889 850 Gene3D - 200 383 IPR023393 -
Cca08g01889 850 MobiDBLite consensus disorder prediction 128 160 - -
Cca08g01889 850 SUPERFAMILY Bet v1-like 167 378 - -
Cca08g01889 850 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Cca08g01889 850 SMART START_1 166 376 IPR002913 GO:0008289
Cca08g01889 850 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01889 Cca-Chr8 51358463 51363847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01889 5 806 Homeobox Transcription Factor Family AT2G34710 80.645 0.0 1335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca08g01889 START 6.9e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01889 K09338 - gmx:100779499 1548.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01889 08 51358463 51363847 Cca08g01889 08 51358463 51363847 ECH