Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01887 ATGCAGATTttcgtgaaaaccctaacgggtaaaacgataaccctggaggtggagtcttcggacaccatcgacaacgtcaaggccaagatccaggacaaggaggggattccgcccgaccagcagcgcctcatattcgccggaaagcagctggaggacggccgcaccctcgccgactacaacatccagaaggagtcgacgctccaCCTCGTCCTCCGCCTCCGCGGCGGCGCCaagaagaggaagaagaagacttacaccaagcccaagaagattaagcacaagcacaagaagGTCAAGCTCGCCCTCCTCCAGTTCTACAAGGTCGACGACTCCGGCAAGATCCAGAGGCTGAGGAAGGAGTGCCCCAACGCCGAATGCGGCGCCGGCACCTTCATGGCCAACCACTTCGACCGCCACTACTGCGGCAAGTGCGGCCTCACCTATGTTTTCCAGAAGCCCCAAGCTTAG 468 0.2885 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLALLQFYKVDDSGKIQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVFQKPQA 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01887 155 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Cca08g01887 155 Gene3D - 81 155 IPR038582 -
Cca08g01887 155 PRINTS Ubiquitin signature 11 31 IPR019956 -
Cca08g01887 155 PRINTS Ubiquitin signature 32 52 IPR019956 -
Cca08g01887 155 PRINTS Ubiquitin signature 53 74 IPR019956 -
Cca08g01887 155 PANTHER UBIQUITIN 1 147 - -
Cca08g01887 155 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Cca08g01887 155 SMART ubq_7 1 72 IPR000626 GO:0005515
Cca08g01887 155 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Cca08g01887 155 Pfam Ribosomal protein S27a 103 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Cca08g01887 155 CDD Ubl_ubiquitin 1 76 - -
Cca08g01887 155 Gene3D - 1 80 - -
Cca08g01887 155 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Cca08g01887 155 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 147 - -
Cca08g01887 155 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Cca08g01887 155 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01887 Cca-Chr8 51323485 51323952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01887 1 152 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 92.105 5.40e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01887 K02977 - gmx:100527854 276.559