Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01886 ATGAAAAAATTGACAGCGGGATCAGGGAGGATTCAAACGCACATTTATGAAGAAAATTATAAGTTCTTAAGGGATGCTCGACTATTTTGTGGCAGCTACGACACAAAACAACACTCCCAATTCATCTGGACACTATTGCATGTAAATCAGGAAATCATGACTTCTTCCACTCATGAACTCACAGATAATGAAGCTGATGCACAGCAGCAGTCAGAACCACAAATTCAGCCTTTATCTGCAAATGGAATTTCTCATGCAGGTATTGGTACTCAGGTTGTTCCGTATGCAACACCTCCACAGCTTGGAACTGGACATGCTGTGGCACCGCCCACTTACCCATATCCAGATCCGTACTACAGGAGTATCTTTACTCCCTATGATGCACAAACTTATCCCCCACAACCCTATGGTGGAAATCCAATGGTCCATCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCACGGTATATTAAGACGTAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAAGCTGCAAGGAACCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTAAGGAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAAATGAGAATGAGCAGGATGAGGCTGCATCAGCTGAGGAATCACAATCCAATATCAATCTCAATTCTGATAAAAACGAGCTTGCGCCATCAGATAGAACATCCTAA 774 0.4276 MKKLTAGSGRIQTHIYEENYKFLRDARLFCGSYDTKQHSQFIWTLLHVNQEIMTSSTHELTDNEADAQQQSEPQIQPLSANGISHAGIGTQVVPYATPPQLGTGHAVAPPTYPYPDPYYRSIFTPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKNENEQDEAASAEESQSNINLNSDKNELAPSDRTS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01886 257 MobiDBLite consensus disorder prediction 177 202 - -
Cca08g01886 257 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 53 239 IPR001289 GO:0003700|GO:0006355
Cca08g01886 257 ProSiteProfiles NF-YA/HAP2 family profile. 161 221 IPR001289 GO:0003700|GO:0006355
Cca08g01886 257 ProSitePatterns NF-YA/HAP2 subunit signature. 166 186 IPR018362 GO:0003677|GO:0016602
Cca08g01886 257 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 218 IPR001289 GO:0003700|GO:0006355
Cca08g01886 257 SMART cbf3 160 221 IPR001289 GO:0003700|GO:0006355
Cca08g01886 257 Gene3D - 161 222 - -
Cca08g01886 257 MobiDBLite consensus disorder prediction 233 251 - -
Cca08g01886 257 MobiDBLite consensus disorder prediction 179 195 - -
Cca08g01886 257 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 53 239 - -
Cca08g01886 257 MobiDBLite consensus disorder prediction 214 257 - -
Cca08g01886 257 PRINTS CCAAT-binding transcription factor subunit B signature 195 218 IPR001289 GO:0003700|GO:0006355
Cca08g01886 257 PRINTS CCAAT-binding transcription factor subunit B signature 164 186 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01886 Cca-Chr8 51316589 51322879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01886 53 257 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.454 4.83e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca08g01886 CBFB_NFYA 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01886 K08064 - gmx:100809036 368.622