Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01882 ATGAATAATTACCGAATGGAACTTGGAAGACCTGTCTCAAGTAGAAGAAAATTGAAAGATTTGTTGCTCCAACGTGATAATCGTTTTTGTGCTGATTGTAATGCACCAGATCCTAAATGGGCGTCTGCTAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTATGCACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGGCATTGGATGATTGGTCAGAGGATGAAATAGATGCAATGATGGAAGTTGGGGGAAATGCTTCTGCCAATTCAATTTATGAAGCTTATATTCCTGAAGGATATACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAATTCATTCGGTCAAAATATGAACTTCAAGAATTTCTCAAACCTAGTTTGCGCATTGTGTCTGGAAAAAGCAGTCTACAATCAAATTCTGTCAATAGCACGATGGATAGTTTTAGAAGTACTAGTACTTCTCAGAGAATGGAAGGCATGGTAGAATTTATTGGACTGTTGAAGGTGAAAGTGATTAGAGGCACCAATTTAGCCATCAGAGATATAAAGTCAAGTGATCCGTATGTTGTTTTGAGCCTTGGCCAGCAGACTGTCCAGACAACTGTAATCCCGAGTAACTTGAATCCAGTCTGGAATGAGGAATACATGCTATCAGTTCCTGAACATTATGGACAGATGAAATTGGTATGTTTGAATTTTGATGTTGTGAAAATCTGA 738 0.3848 MNNYRMELGRPVSSRRKLKDLLLQRDNRFCADCNAPDPKWASANIGVFICLKCCGMHRSLGTHISKVLSVALDDWSEDEIDAMMEVGGNASANSIYEAYIPEGYTKPGPDAGHEQRSKFIRSKYELQEFLKPSLRIVSGKSSLQSNSVNSTMDSFRSTSTSQRMEGMVEFIGLLKVKVIRGTNLAIRDIKSSDPYVVLSLGQQTVQTTVIPSNLNPVWNEEYMLSVPEHYGQMKLVCLNFDVVKI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01882 245 Pfam C2 domain 172 242 IPR000008 -
Cca08g01882 245 Gene3D Arf GTPase activating protein 7 136 IPR038508 -
Cca08g01882 245 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096
Cca08g01882 245 ProSiteProfiles C2 domain profile. 154 245 IPR000008 -
Cca08g01882 245 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 243 IPR044518 GO:0005096|GO:0005543
Cca08g01882 245 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Cca08g01882 245 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cca08g01882 245 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 8 243 - -
Cca08g01882 245 Gene3D C2 domain 154 244 IPR035892 -
Cca08g01882 245 CDD ArfGap 18 124 - -
Cca08g01882 245 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Cca08g01882 245 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Cca08g01882 245 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Cca08g01882 245 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 161 242 IPR035892 -
Cca08g01882 245 SMART arf_gap_3 16 137 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01882 Cca-Chr8 51288490 51297172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01882 1 242 C2H2 Transcription Factor Family AT4G05330 67.200 1.74e-124 355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01882 08 51288490 51297172 Cca08g01882 08 51288490 51297172 ECH