Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01881 ATGGCTAAATATTCTGACCCTCATATATGCCAATGTCTGAGTCGGTTGTTAACCTTCCGGCGACACTTTCCGGTCACAGTCGCCGGAAACCGCCGCAAGACCGGCCAACAGTTGGTGGAGGAAGTTTTGTCCTTGGCCAAAGGCCTACTCCACCTTGGACTCACACCTGGTCACGTGGTTGCCATCTCTGCTTACAATAGTGATAGGTATCTGGAGTGGTTGTTAGCCATTGCATTTGTTGGAGGAATAGCTGCCCCTCTGAACTATCGCTGGAGTTTTGAAGAGGCAAGATTAGCAATGACTGCTGTGAGGCCAGTGATGTTAGTGACTGATGAGAGCAGTTACGCATGGTATTCAAAACTCCACCAAAATGATATTCCATCTCTGAAGTGGCATATTTTGTTAGATTCCCCTTCCTCAGATTTCACAAAGTGGAATGTGATAACTCCAGAAATGCTTAAGAGGCATCCTGGAAATCTTCTACCATCTGATTACTCCTTGGCACCTGAAGGCGCTGTCATAATATGCTTTACTTCAGGAACTACGGGAAAGCCTAAGGGAGTCACCCTAAGCCATGGAGCTTTGATCATACAATCCCTAGCCAAGATTGCCATAGTTGGCTACAATGAGGATGATGTCTATCTGCATACTGCTCCATTATGCCATATTGGTGGCTTGTCATCAGCCTTGACCATGCTTATGGTTGGAGGTTGCCATGTCTTGATGCCAAAGTTTGATGCAGAATCGGCTGTTGATGCCATAGAGCAATACACAGTGACATCTTTTATCACAGTTCCTGCAATAATGGCCAGTCTGATTTCTATAATTAGGCAAAAAGAGACCTGGAAAGGGGGAGAAACTGTCGAGAAAATACTTAATGGGGGTGGAAGCCTCTCACATGAGCTCATCAAGGATACTAGCTTATTCTTCCACAAAGCTAAACTTATTTCAGCTTATGGGATGACAGAGACATGCTCTTCATTGACATTTCTGTCACTCTACGACCCGATGAATGAAAATACAAACCAGTCCCTTCAGACATTTGGTGTGGCAGGATCTAAGATTACTTTCCAGCCACAAGGTGTTTGTGTTGGCAAGGCTGCACCCCATATAGAACTGAAGATAAGTGCAGATACTTCCGGTCACACTGGGAGAATTCTAACTAGAGGACCACATATAATGCTCAGGTATTGGGATCAAACTCTCACAAATCCATTAAATCCAAATAACGAAGCCTGGCTAGACACAGGTGACATTGGATCAATTGATCATTATGGTAATTTGTGGCTCCTTGGCCGAACAAATGGTCGAATCAAGAGTGGTGGGGAGAACATTTACCCTGAAGAGGTTGAGGCAATTCTACTAGAACATCCAGGGATTGCTAGTGTTGTTATTGTGGGAATCCCAGATGCAGGCCTGACAGAGATGGTAGCAGCATGTATCCAACTAAGAGAAAATTGGAAATGGTCAGAGCAGTCTTCTTCAGATAAAGAGTTTCACCTATCTAGAAAGAATCTCCAGCAATATTGCATAGAAAATCATTTAAGCAGGTTTAAGATACCAAAAATGTTTATTGTATCGAGGAAGCCATTTCCAGTCACAACCACAGGGAAAATAAGGAGAGACCAAGTCAGAAAGGAAATTATATCTCAGCTGCAATCTTTGCATAGTAATCTTTGA 1680 0.4357 MAKYSDPHICQCLSRLLTFRRHFPVTVAGNRRKTGQQLVEEVLSLAKGLLHLGLTPGHVVAISAYNSDRYLEWLLAIAFVGGIAAPLNYRWSFEEARLAMTAVRPVMLVTDESSYAWYSKLHQNDIPSLKWHILLDSPSSDFTKWNVITPEMLKRHPGNLLPSDYSLAPEGAVIICFTSGTTGKPKGVTLSHGALIIQSLAKIAIVGYNEDDVYLHTAPLCHIGGLSSALTMLMVGGCHVLMPKFDAESAVDAIEQYTVTSFITVPAIMASLISIIRQKETWKGGETVEKILNGGGSLSHELIKDTSLFFHKAKLISAYGMTETCSSLTFLSLYDPMNENTNQSLQTFGVAGSKITFQPQGVCVGKAAPHIELKISADTSGHTGRILTRGPHIMLRYWDQTLTNPLNPNNEAWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAILLEHPGIASVVIVGIPDAGLTEMVAACIQLRENWKWSEQSSSDKEFHLSRKNLQQYCIENHLSRFKIPKMFIVSRKPFPVTTTGKIRRDQVRKEIISQLQSLHSNL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01881 559 PANTHER ACYL-COA SYNTHETASE FAMILY MEMBER 2, MITOCHONDRIAL 6 548 - -
Cca08g01881 559 PANTHER ACYL-COA SYNTHETASE 6 548 - -
Cca08g01881 559 SUPERFAMILY Acetyl-CoA synthetase-like 8 552 - -
Cca08g01881 559 ProSitePatterns Putative AMP-binding domain signature. 175 186 IPR020845 -
Cca08g01881 559 Pfam AMP-binding enzyme C-terminal domain 449 538 IPR025110 -
Cca08g01881 559 CDD AFD_class_I 175 540 - -
Cca08g01881 559 Pfam AMP-binding enzyme 26 440 IPR000873 -
Cca08g01881 559 Gene3D - 436 551 IPR045851 -
Cca08g01881 559 Gene3D - 3 433 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01881 Cca-Chr8 51279964 51286376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01881 45 467 Monolignol Biosynthesis Gene Families AT3G21240 30.046 4.29e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01881 K14760 - gmx:100809925 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01881 08 51279964 51286376 Cca08g01881 08 51279964 51286376 ECH