Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01874 ATGAAGCCCTTTGGCCTTTTAGTGCTATCTCTATATTTCTTCGCGGTGGCGGGGCAGCTTCCATCCCAGGACATTCTAGCGTTGCTGGAGTTTAAGAAAGGCATAAAGCATGACCCTACTGGTTATGTTCTCAATTCATGGAATGAGGAATCCATTGACTTTGATGGATGTCCATCTTCATGGAATGGAGTTCTGTGCAATGGTGGTAATGTTGCTGGGGTTGTCCTTGATAACTTGGGGCTCTCTGCTGACACTGACTTGAGTGTTTTTTCAAATCTCACAAAGCTTGTGAAACTCTCCATGGCCAACAATTCCATATCTGGAAAATTGCCTGACAACATTGCTGATTTCAAAAGCCTTGAGTTCCTGGATATTTCGAATAACCTCTTTTCCTCATCCTTGCCATTGGGAATTGGCAAGTTAGGTAGCTTGCAGAATCTTTCATTGGCTGGAAACAACTTCTCCGGCCCAATTCCTGATTCTATTTCACAAATGGCTTCCATCAAGTCCCTCGATTTGAGTCGCAACTCCTTTTCTGGAGCCCTGCCAGCATCATTGACTGAGGTGAATAGCCTTGTGTCTCTTAACTTGTCTCATAATGGCTTCACTGGGAAAATTCCCAAAGGTTTTGAGCTCATCCCTGCTCTTGAAAAACTTGACTTGCATGGGAATATGCTTGAAGGTAATTTGGATGTTGAATTTATGCTTTTATCAAGTGCCAGCTATGTTGATTTAAGTGAGAACATGCTGTCAAGTTCTGATTCCAAGCAGAAGTTTCTTCCGCGACTATCTGAAAGTATTAAGCATCTGAATCTAAGCCATAACCAACTTACTGGGTCATTGGCAAGTGGAGCTACTGAACCTGTTTTTGAAAACTTGAAGGTGTTGGACCTCAGCTACAATCAGTTGGATGGAGAATTGCCTGGATTTGATTTTGTTTATGATCTCGAGGTCCTTAGGCTTAGCAACAACAGATTTTCAGGATTTATTCCTACCGGCCTACTGAAAGGGGACTCTTTGGTTTTAACCGAATTGGATTTGAGTGCCAACAATCTCACGGGGTCACTTAGTATAATTATATCAACAACACTTCGCTCTCTTAATCTCTCGTCAAATGAGTTCACTGGTGAACTGCCACTGCTGACTGGGACCTGTGCTGTACTTGATCTGTCAAATAACAAGTTAGAAGGAAACTTAACCAGGATATTGAAATGGGGGAATATAGAATTTCTTGATCTGAGCGGGAATCATTTGACAGGGGCCATCCCTGAGGTAACTCCTCAATTTTTACGATTAAATTATTTGAATCTTTCCCATAATTCTCTTACCAGCTCCCTTCCAAAAGTCATAACACAGTATCCAAAGCTTAGAGTGCTTGACATTAGTTTCAACCAATTAGATGGATTACTTCGAGCTGGTCTGCTCACAATGCCCACAATGCAAGAACTGCATCTCGAAAACAATATGATCTCTGGTGGCATCAATTTATCATCTTCTCTTGGCCAATCTGATCTTCAGATTCTTGATCTTTCTCACAACCAGCTCAATGGCTATTTTCCTGATGAGTTTGGGTCATTGACTGGCCTGAAAGTGCTAAATATTGCTGGGAATAATTTTTCTGGTTCTCTTCCAACCACCATTGCTGACATGAGTTCACTGGATTCCATAGATATATCAGAGAATCATTTTACTGGTCCTCTACCAAATAACATGCCAAAGGGGATCCAGAGCTTTAATGCTTCACAAAATGATCTGTCTGGAGTGGTCCCAGAAGTTCTTAGAAAGTTTCCTAGTTCTTCTTTCTTTCCTGGGAATACCAAGTTACATTTTCCAAATGGTCCTCCTGGATCAACCTCTTCACCTGCGGAAAGTTCCAAGAGGAGGCATATGAACACCATTGTTAAAGTAATAATTATAGTATCATGTGTGGTTGCACTCTTCATATTAATCTTGCTTGCTGTCTTCATACACTATATTCGTATATCAAGATCTCCACCAGAATATGATACAGGTAAGGATGTTCACAGGCGTCCTCAACCAATTATCTCAGCTCCTGTTCGGACGACAGATAGGGGTGGTGCTTTGGTTGTTTCAACGGAAGACCTTGTAACATCACACAAAGAGTCACCATCAGAGATAGTCACCCCTGACGAAAAAATGGCAGCTGTAACGGGGTTCTCTCCATCTAAACAAAGCCACTTTTCATGGTCTCCAGAATCTGGTGATTCATTTACTGGTGAAAATCTTGCAAGACTAGATACAAGATCACCAGACCGGTTAATTGGAGAGCTACATTTTCTCGATGATACAATAACATTGACACCGGAGGAGCTCTCAAGGGCACCAGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTACAAAGCAACTCTTGATAATGGCTTGTTGTTGAGGGTGAAGTGGTTGAGAGAAGGAGTGGCGAAACAGAGAAAAGAATTTGTAAAGGAGACAAAAAAGTTTGCGAACATCAGGCATCCAAATGTTGTGGGATTGAGAGGATATTATTGGGGTCCTACGCAGCACGAGAAGCTTATACTTTCAGATTACATCTCACCAGGAAGTCTTGCAAGTTTTCTTTACGATCGACCTGGAAGAAAAGGTCCACCTTTAACTTGGTCTCAGAGGCTCAAAATAGCCGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTTGATCGTGCCATTCCTCACGGGAACCTGAAAGCTACGAATGTGTTGTTAGATACAACTGATATGAACGCACGTGTTGCTGATTACTGCCTTCATCGGCTCATGACTCAAGCTGGCACTATTGAGCAGATTCTGGATGCTGGTGTCTTGGGATATCGGGCACCGGAGTTGGCTGCTTCCAAGAAGCCAATGCCCTCTTTCAAGTCAGATGTTTATGCTTTTGGAGTGATACTTTTGGAGCTTCTAACAGGAAGGTGTGCTGGTGATGTGATATCTAGCGAGGAGGGAGGTGTTGATTTGACAGATTGGGTGCGGTTGCGTGTAGCAGAAGGCCGAGGCTCAGAATGTTTTGATGCTGCATTGATGTCAGAAACGGGCAATGCAGTTGTGGAAAAGGGAATGAAGGAGGTCCTGGGGATAGCAATGCGATGCATTCGATCGGTTTCTGAAAGGCCTGTTGAAGGCCAAAGATGTTGGACAGAGTCCTCAGCAAACTCAGCTGGTTTTCACTTTAAGGAAGCTGAGTGCCACCAATGTGACAGTAGCATGATACTGTACAGTGCAGCTGTTAACCCAAACGGCCAAAAACGCAAAAACCCTCGACGCTCTCGCTGTGACTGCACAAGTCGCGCACTCCGAGCCTCCGACAGCGGCGGCGCGTTCACGTTCATCTCTTCGCCGTACCGCGGCGTTCATCCTCTCCTCACCGCCCAGCGACACGACCTTGCTCTGATTATACACTGA 3438 0.4386 MKPFGLLVLSLYFFAVAGQLPSQDILALLEFKKGIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADTDLSVFSNLTKLVKLSMANNSISGKLPDNIADFKSLEFLDISNNLFSSSLPLGIGKLGSLQNLSLAGNNFSGPIPDSISQMASIKSLDLSRNSFSGALPASLTEVNSLVSLNLSHNGFTGKIPKGFELIPALEKLDLHGNMLEGNLDVEFMLLSSASYVDLSENMLSSSDSKQKFLPRLSESIKHLNLSHNQLTGSLASGATEPVFENLKVLDLSYNQLDGELPGFDFVYDLEVLRLSNNRFSGFIPTGLLKGDSLVLTELDLSANNLTGSLSIIISTTLRSLNLSSNEFTGELPLLTGTCAVLDLSNNKLEGNLTRILKWGNIEFLDLSGNHLTGAIPEVTPQFLRLNYLNLSHNSLTSSLPKVITQYPKLRVLDISFNQLDGLLRAGLLTMPTMQELHLENNMISGGINLSSSLGQSDLQILDLSHNQLNGYFPDEFGSLTGLKVLNIAGNNFSGSLPTTIADMSSLDSIDISENHFTGPLPNNMPKGIQSFNASQNDLSGVVPEVLRKFPSSSFFPGNTKLHFPNGPPGSTSSPAESSKRRHMNTIVKVIIIVSCVVALFILILLAVFIHYIRISRSPPEYDTGKDVHRRPQPIISAPVRTTDRGGALVVSTEDLVTSHKESPSEIVTPDEKMAAVTGFSPSKQSHFSWSPESGDSFTGENLARLDTRSPDRLIGELHFLDDTITLTPEELSRAPAEVLGRSSHGTSYKATLDNGLLLRVKWLREGVAKQRKEFVKETKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWSQRLKIAVDVARGLNYLHFDRAIPHGNLKATNVLLDTTDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISSEEGGVDLTDWVRLRVAEGRGSECFDAALMSETGNAVVEKGMKEVLGIAMRCIRSVSERPVEGQRCWTESSANSAGFHFKEAECHQCDSSMILYSAAVNPNGQKRKNPRRSRCDCTSRALRASDSGGAFTFISSPYRGVHPLLTAQRHDLALIIH 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01874 1145 ProSiteProfiles Leucine-rich repeat profile. 292 314 IPR001611 GO:0005515
Cca08g01874 1145 MobiDBLite consensus disorder prediction 606 626 - -
Cca08g01874 1145 Pfam Leucine rich repeat 143 201 IPR001611 GO:0005515
Cca08g01874 1145 Pfam Leucine rich repeat 411 466 IPR001611 GO:0005515
Cca08g01874 1145 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
Cca08g01874 1145 SUPERFAMILY L domain-like 43 378 - -
Cca08g01874 1145 Gene3D Ribonuclease Inhibitor 22 188 IPR032675 -
Cca08g01874 1145 Pfam Leucine rich repeat N-terminal domain 22 67 IPR013210 -
Cca08g01874 1145 SUPERFAMILY Protein kinase-like (PK-like) 783 1022 IPR011009 -
Cca08g01874 1145 Pfam Protein tyrosine and serine/threonine kinase 784 982 IPR001245 GO:0004672|GO:0006468
Cca08g01874 1145 SMART LRR_typ_2 189 212 IPR003591 -
Cca08g01874 1145 SMART LRR_typ_2 93 116 IPR003591 -
Cca08g01874 1145 SMART LRR_typ_2 165 188 IPR003591 -
Cca08g01874 1145 SMART LRR_typ_2 503 525 IPR003591 -
Cca08g01874 1145 SMART LRR_typ_2 290 312 IPR003591 -
Cca08g01874 1145 SMART LRR_typ_2 313 337 IPR003591 -
Cca08g01874 1145 SMART LRR_typ_2 117 141 IPR003591 -
Cca08g01874 1145 SMART LRR_typ_2 526 549 IPR003591 -
Cca08g01874 1145 SMART LRR_typ_2 429 453 IPR003591 -
Cca08g01874 1145 Gene3D Transferase(Phosphotransferase) domain 1 859 1061 - -
Cca08g01874 1145 ProSiteProfiles Protein kinase domain profile. 780 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01874 1145 Gene3D Phosphorylase Kinase; domain 1 772 857 - -
Cca08g01874 1145 PANTHER OS07G0626500 PROTEIN 6 1050 - -
Cca08g01874 1145 Gene3D Ribonuclease Inhibitor 189 258 IPR032675 -
Cca08g01874 1145 Gene3D Ribonuclease Inhibitor 259 620 IPR032675 -
Cca08g01874 1145 SUPERFAMILY L domain-like 290 593 - -
Cca08g01874 1145 Pfam Leucine Rich repeat 292 306 IPR001611 GO:0005515
Cca08g01874 1145 Pfam Leucine Rich repeat 361 377 IPR001611 GO:0005515
Cca08g01874 1145 Pfam Leucine Rich repeat 266 279 IPR001611 GO:0005515
Cca08g01874 1145 PANTHER - 6 1050 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01874 Cca-Chr8 51214153 51224306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01874 24 1054 Receptor kinase-like Gene Family AT3G28040 30.183 1.71e-96 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca08g01874 PK_Tyr_Ser-Thr 1.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01874 - - gmx:100793639 1882.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01874 08 51214153 51224306 Cca08g01874 08 51214153 51224306 ECH