Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01864 ATGGACATGACTATGGCAGCTGCTGGTGGGTCTGGAGATGAACAAAAGAATGATCAGAATGGAAAAAAGTCCTACCGTCGTCATAAGTCTGATCAAACAACTAAGCTTGAAGAATTATTTAGCGTATGTCCACATCCAGATGAAAAGCAAAGGCGTCAAATAGCCAAAGATCTCGGACTTGAGCCAAAACAAGTGAAGTTTTGGTTTCAAAATAAGAGGACTCAAAAAAAGACTCAAACTGAAAGGGCAAATAACAATGCTCTTCGTGTCGAGAATGAAAGAATGTATAATGAAAATCTCGTAATTAGAGAGACATTAAAGAATATAATTTGTCCATCATGTGGGGGTCCACCCTATGGAGATAAAGGACATGAACATTCTCTAGAAAAACTTCGCCTCGAAAATGCTCGTCTAAATGTAGAGCGTGAGAAAGTGTCTAATCTTCTTACAATGTACATGGAGAAACCGACGTCAGAACTAAAGTTAGAATCAACTCCTATTAAAGGATCTTCATCACGTGATGCATTAATATTAGGAAGTCCTCTAAAACTAGGAGTTGGAAGTGCTGGTATGAATCTTGGTGGTTCAACAAGTCTTTCATTTCAAGGTGAAGAAATCGTGTCCAACCCAGGGAGCAAAGTAACAAAAATGGAAAAAACAATGATGTCACAAATTGCAATAGCCGCTAAGGAGGAATTACTCAGGCTTTTGTGCACGAGTGAGCCCTTATGGTTCAAGTCTTCAATTGATCAAAGATTTGTTCTTCATCTTGAATGCTATGAAAATCTCTTCCCAAGGATTAATCACTTCAAAAATTCCAAAGCACATGTAGAATCATCAAAAGATTCACGAATTGTGAAAATTCAGGCGAAGGAATTAGTTGACATGTTCTTGGACTCGGAAAAATGGAAAAGTTTTTTCCCAACAATTGTGACAAAAGCGCAGACAATCGAAGTACTTGAAAATGGTTCAATAGATAGCCGAAGTGGAACTTTATTATTGATGTATAAAGAGATGCACGTTCTATCACCTTTAGTGCCATCTCGAGAATTCTACTTCCTCCGCTATTGTCAACAACTTGAAGCCGGTGTATGGGTGATAGCAGATGTTTCAGTTGACTACATGAAAGGGACTAACCCTCATCCCAGTTCTTGGAGGTTTCCCTCAGGATGCATGGTTCATGAAATTTCTAATGGGGCATGCCATGTTTCTTGGGTTGAACATGTGGAAGTGGATGAGAAGATCCAACCACATCAACTTTATCGATATATTGTTAATAACAATATTGCATATGGAGCAAAAAGATGGCTTACAGAACTTCAAAGAATGTGTGAAAGATTTATCAGTGTTGGAGCTGAATACATATCTAATTATGACATCGGTGGAGTGATCACTACAATCGGAGGAAGGAAGGGTATAATGAAGCTTTCTCTTCAAATGGTTAAGAACTTCTATGGATTTTTAAACATGTCAAGTAACACTAACTTCCCCCAACATTTAACTGAGGGGAATAATAGGGTTACGATCTCTGCTCAAAAAAATACAAACCCAAGCCAACCAAATTCCATGATTACCATCACTGCTGCTACATCTTTTTGGCTTCCGCTCCCTTCTCAGAATCTTTATGACTTTTTTAGAGATCCAATAAGACGTGCTAAGTGGGATGTCATGTGTTATAAAAACTCAGTGCAAGAGATTGCACGCATCTCCTCCGGAACTCATCCTAGCAACTACATATCGATTATTCAGCCTGTCCACCCAACTATGAATAATGTGGTGATGATTCAAGAAAGTTCTTTTGATCCTCTAGGATCATATGTTGTATATTCTCCCCTCAATATACTTGACATAAGGAGGGCTATAAATGGTGAAGATTCTTCAACAACGTCAATTTTTCCATCAGGAATTGTCATTTTAGATAATGAACAATCTATTACAAATGCTCCGACATCAAGTAGTGGAAATGGTATTTTAAGAACAAGAGGTTCTCTTTTGACTGTAGCTTTCCAAATACTGATGAATAGTCCAACGACAACTGCCTTGGAGTCTGTGGCTGTTGTTAACTCTCTCATTACCTCAACAGTAAAAAACATAAAGGATGCTTTGATGAATGGTTCCAATTTAGAGTTTTAG 2133 0.3807 MDMTMAAAGGSGDEQKNDQNGKKSYRRHKSDQTTKLEELFSVCPHPDEKQRRQIAKDLGLEPKQVKFWFQNKRTQKKTQTERANNNALRVENERMYNENLVIRETLKNIICPSCGGPPYGDKGHEHSLEKLRLENARLNVEREKVSNLLTMYMEKPTSELKLESTPIKGSSSRDALILGSPLKLGVGSAGMNLGGSTSLSFQGEEIVSNPGSKVTKMEKTMMSQIAIAAKEELLRLLCTSEPLWFKSSIDQRFVLHLECYENLFPRINHFKNSKAHVESSKDSRIVKIQAKELVDMFLDSEKWKSFFPTIVTKAQTIEVLENGSIDSRSGTLLLMYKEMHVLSPLVPSREFYFLRYCQQLEAGVWVIADVSVDYMKGTNPHPSSWRFPSGCMVHEISNGACHVSWVEHVEVDEKIQPHQLYRYIVNNNIAYGAKRWLTELQRMCERFISVGAEYISNYDIGGVITTIGGRKGIMKLSLQMVKNFYGFLNMSSNTNFPQHLTEGNNRVTISAQKNTNPSQPNSMITITAATSFWLPLPSQNLYDFFRDPIRRAKWDVMCYKNSVQEIARISSGTHPSNYISIIQPVHPTMNNVVMIQESSFDPLGSYVVYSPLNILDIRRAINGEDSSTTSIFPSGIVILDNEQSITNAPTSSSGNGILRTRGSLLTVAFQILMNSPTTTALESVAVVNSLITSTVKNIKDALMNGSNLEF 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01864 710 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 704 IPR042160 -
Cca08g01864 710 Gene3D - 9 96 - -
Cca08g01864 710 Gene3D - 269 447 IPR023393 -
Cca08g01864 710 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Cca08g01864 710 SUPERFAMILY Bet v1-like 216 447 - -
Cca08g01864 710 SUPERFAMILY Homeodomain-like 12 79 IPR009057 -
Cca08g01864 710 CDD homeodomain 22 79 IPR001356 GO:0003677
Cca08g01864 710 Pfam Homeodomain 22 77 IPR001356 GO:0003677
Cca08g01864 710 SUPERFAMILY Bet v1-like 470 702 - -
Cca08g01864 710 CDD START_ArGLABRA2_like 219 445 - -
Cca08g01864 710 SMART START_1 224 446 IPR002913 GO:0008289
Cca08g01864 710 SMART HOX_1 21 83 IPR001356 GO:0003677
Cca08g01864 710 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 14 704 - -
Cca08g01864 710 Pfam START domain 225 446 IPR002913 GO:0008289
Cca08g01864 710 ProSitePatterns 'Homeobox' domain signature. 54 77 IPR017970 GO:0000981|GO:0006355
Cca08g01864 710 Coils Coil 128 148 - -
Cca08g01864 710 MobiDBLite consensus disorder prediction 16 34 - -
Cca08g01864 710 ProSiteProfiles START domain profile. 215 449 IPR002913 GO:0008289
Cca08g01864 710 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01864 Cca-Chr8 51082655 51094648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01864 22 702 Homeobox Transcription Factor Family AT1G73360 43.043 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca08g01864 START 3.6e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01864 K09338 - gmx:100794552 968.378