Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01863 ATGGATTCTTCTATTGCAAGTGTTGGCGGGTCTGGTGATGAAGGCTCTCAAAACTTAAATGAAGGAAGAAGACCTTCATACAAACGTCTTACTTCTGTACAAACAGCCAAACTTGAAAGATTCATCAAGGAGTGTCCACATCCAGATGAAGTCCAACGACGTCATTTAGCTTCTGAGATTGGACTTGAACCCAAACAAATAAAGTTTTGGTTTCAGAATAAAAGGACTCAAATCAAGAATCAACATGAGCGAGCAGATAACACAGCTCTTCGAGTTGAGAATGATAGGATACATAGCGAAAATGTCCTAATGAAAGAAGCATTAAAGAATATGCTTTGTCCATCTTGTGGGGGTCCACCATATCCAGAAGGAAAACATGAACATGTTATCCAAAAGATGCAACTTGAAAATGCCCAACTAAAAGAAGAGCATGAAAAAGTGTCTAGCCTTCTTGCAAGGTACTTGGAGAAACAAATGTCACCACCTGAGTTACAACAAGGTTTTATTCCTATCACAGGATCAAGTTCACATTCTCCAACAACACTAGGAAATTCACAAAACCAAGAGACAGGTGAAAGTTCATGTCCCAATCGAAGTCTTGGTAAGCAAATTATGGACAGTGACCATTTATTGCCTAACTCATCGGGAAGTGAAGGTATAGAAAATACCCTTATGTCAAAGGTTGCTATTGATGCAATGGATGAATTAGTTAGGCTTCTTCGAATTAATGATCCTTTTTGGACCAATACTTCAACTCAAGATGAGAAATTCATTCTTAACCATGAAAATTATGAAAAAGTGTTTCCAAGGACCAATCATTTCAAAGGTGTCAACATGCATGTAGAAGCAACAAAAGATTCGGGAATAGTGAGCATTAATTGCATCCAGCTAGTTGAGATGTTCTTAGATTCAGACAAATGGGCTAATCTTTTTCCAACAATTATTACGAAAGCAGAAACAATCAAAGTACTTGAAAGTGGTTTGCTAGGAAATCGAAGTGGAGCTTTGCAACTGATGTTTGAAAAAATGCATGTTCTTTCACCTTTAGTGCAACCTCGTGAATTCCAATTTCTTCGTTATTGTCAACAAATTGAAGAAGGTGTATGGGTGATAGTAGATGTGTCATTTGATTCATTTCGACAAAAAAACTCCATTTTTCACTCTTGGAGATATCCCTCTGGATGCATGATTCAAGAAATGCCTAATGGGTGTTCCATGGTGACTTGGATTGAACATGTAGAAGTGGATGATAAGATCCAAGCACATCAACTATACAAAGATATTGTTCATAAAGGAATTGCATATGGAGCAGAAAGATGGATTATGGAACTTCAAAGAATTTGTGAGAGATTTGCTTGTTTTTATGTTGAAAAGATACCTAATCATGACTCTGAAGGAGTTGTCAATTCTCTTAAAGGAAGGAGGAGTGTAATGAATTTTTCTCATCGTATGATCAAGATCTTTTGTGAAAGTTTAACTATGTCGGGTAAATTAGACCTCCCACAATCAAATATGGAGAATAATAGCGGGGTGAGGGTTTCTATTCGCAAAAACACAGACCTTGGTCAACCAAATGGCATGATTGTTGTAGCTGCTACCTCCCTTTGGCTTCCTCTTCATTATATGAAAGTTTTTGAGTTCTTCACAGATGATAAAAGACGGGCTCAGTGGGATGTTCTTTGTTGCGGAAATCCTACACACAGGGTTGCACACATCTCAAATGGAATTCATCCTCACAACTGTATATCAATTCTTCAGCCATTCATCCCTAGCGAGAACAATGCACTAATTCTTCAAGAGAGTTTTACAAATCCCATGGGATCGTATGTTGTATATGCTCCAACCGATGTAGCAACTATGAATTTAGCCATAAAAGGAGAGGACTCTTCAGTGTTACCAATTCTTCCATCAGGTTTTGTCATCTCTGCAGATGGTGAACCAAATGCAACTTTGGGAGCTTTTAATGATGTAAATATTGAAAGAATAGGGGGTTCATTATTGACAGTAGCTTTTCAAATACTAGCTTCAAGTCCAGATGGAATCAATATGCCAAATATGGAATCAATGTCAGCTGTGAACACCCTTTTAACCTCAACAATCCTAAAAGTCAAGGATGCTTTGAATTGCAACAATTTGGAGTGA 2142 0.3768 MDSSIASVGGSGDEGSQNLNEGRRPSYKRLTSVQTAKLERFIKECPHPDEVQRRHLASEIGLEPKQIKFWFQNKRTQIKNQHERADNTALRVENDRIHSENVLMKEALKNMLCPSCGGPPYPEGKHEHVIQKMQLENAQLKEEHEKVSSLLARYLEKQMSPPELQQGFIPITGSSSHSPTTLGNSQNQETGESSCPNRSLGKQIMDSDHLLPNSSGSEGIENTLMSKVAIDAMDELVRLLRINDPFWTNTSTQDEKFILNHENYEKVFPRTNHFKGVNMHVEATKDSGIVSINCIQLVEMFLDSDKWANLFPTIITKAETIKVLESGLLGNRSGALQLMFEKMHVLSPLVQPREFQFLRYCQQIEEGVWVIVDVSFDSFRQKNSIFHSWRYPSGCMIQEMPNGCSMVTWIEHVEVDDKIQAHQLYKDIVHKGIAYGAERWIMELQRICERFACFYVEKIPNHDSEGVVNSLKGRRSVMNFSHRMIKIFCESLTMSGKLDLPQSNMENNSGVRVSIRKNTDLGQPNGMIVVAATSLWLPLHYMKVFEFFTDDKRRAQWDVLCCGNPTHRVAHISNGIHPHNCISILQPFIPSENNALILQESFTNPMGSYVVYAPTDVATMNLAIKGEDSSVLPILPSGFVISADGEPNATLGAFNDVNIERIGGSLLTVAFQILASSPDGINMPNMESMSAVNTLLTSTILKVKDALNCNNLE 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01863 713 MobiDBLite consensus disorder prediction 165 201 - -
Cca08g01863 713 Gene3D - 226 448 IPR023393 -
Cca08g01863 713 CDD START_ArGLABRA2_like 224 449 - -
Cca08g01863 713 Pfam Homeodomain 26 79 IPR001356 GO:0003677
Cca08g01863 713 Pfam START domain 228 450 IPR002913 GO:0008289
Cca08g01863 713 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Cca08g01863 713 Coils Coil 130 157 - -
Cca08g01863 713 SUPERFAMILY Homeodomain-like 18 85 IPR009057 -
Cca08g01863 713 SMART HOX_1 23 85 IPR001356 GO:0003677
Cca08g01863 713 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Cca08g01863 713 Gene3D - 11 96 - -
Cca08g01863 713 SUPERFAMILY Bet v1-like 507 676 - -
Cca08g01863 713 MobiDBLite consensus disorder prediction 1 26 - -
Cca08g01863 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 18 709 - -
Cca08g01863 713 SUPERFAMILY Bet v1-like 223 451 - -
Cca08g01863 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 709 IPR042160 -
Cca08g01863 713 ProSiteProfiles START domain profile. 218 453 IPR002913 GO:0008289
Cca08g01863 713 MobiDBLite consensus disorder prediction 165 218 - -
Cca08g01863 713 CDD homeodomain 23 82 IPR001356 GO:0003677
Cca08g01863 713 SMART START_1 227 450 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01863 Cca-Chr8 51069832 51076686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01863 23 708 Homeobox Transcription Factor Family AT1G73360 44.823 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca08g01863 START 2.2e-37 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01863 K09338 - gmx:100795075 1147.88