Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01843 CTCCAAGTTACGACAGTGGAACTGGGAGGACAGATATCGATGTTACAAGTAAAGCAAAGCCGGTCATAATAATAGGAGTTTCTGCAAGTCTTGGATCCATCATTTTACTCATTGTTTTATGGCGGTTGTATAAAGTTGTAAGAAAAAAAATAGTGAAGAAACGCAAAGAAAGATTCTTCAAGCGAAATGGAGGACTATTGTTGGAACAAAGATTGTCTTCTGGTGAAGTTAATGTAGATAAAGTTAAACTCTTTAGCTTAAAGGATTTAACGAAGGCCACCGATCACTTTAATGTAAGTAGAGTACTTGGAAAGGGAGGCCAAGGTACTGTTTACAAAGGCATGTTAACAGATGGAAAAATTATTGCAGTCAAAAAATTTAAACTCCAAGGAAATGTTGAAGAGTTCATCAATGAATTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTGTTAGGAAGTTGTTTGGAGACTGAAATTCCTTTGCTTGTTTATGAATTTATTCCTAATGGCAACCTTTTTGAGTATTTGCATGAACAAAATGAGGACTTATCAGTGACATGGGATATGCGTTTAAGAATTGCTGCTGAAGTTGCAGGAGCTTTGTTTTACTTACACTCGGTTGCTTCTCAACCTATTTATCACAGAGACATCAAGTCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAAGTAGCAGACTTTGGCACATCAAGAATGGTTTCCATTGAAGCTACTCACCTCACTACAGTGGTTCAAGGAACTTTTGGATACTTAGATCCTGAATATTTCCATACTAGTCAATTTACAGAGAAGAGTGATGTTTATAGCTTTGGAGTGGTTCTTGTTGAACTCTTGTCAGGACAAAGGCCAATATCCTCCCTAAGACCTGGGGAAGCTAAAAGTTTAGCTTCATATTTCATTCTTTGTATAGAGGAAGATCGTCTATTTGATGTTATTGATGAAAGAGTCATAAAAGAGGGGAAGAAAGAACATATCATTGCAGTTGCTAATCTTGCAAGCAGATGTTTAGAGTTGAATGGGAAGAAACGGCCAACTATGAAGGATGTCACATTGGAATTAGAAGGTATCCGAAAATTTGTAAGTACATCTAATACACAAGAAGTACATGCTGAACTTGATCTTGTTCGATTTGAAGACTATCAATCTTGGGATAAGTATTCTACTACCCTAAATACAGGCAAAGCAGTGCTACTTCCAGGATTTTTTTCGGCCAAGCTCGGGAACCTTCCCTTTAGTGAAAGGCTCTATCCCGGGACGAAGAGAAAGAGAGGGGGAAGGCCAAGTACGAGATCACAGGGATCGGGCTGGAGCTTGACAAGAGCGATACAGGAAACCATACAATCGAAGGCTAGCAAGAAGAAGCAAAAAGATAGTAAAAGCTCAAGGGATTCATCACGAAGGCAAGTGCTCCAGCGGAAGCTATCAATTCAAAGGGAAGACCGGGTAGTGGTAGTTAACCGGGGGAGGGAGCAGCTCATCCGTCAGGATGGGATCCCTCTACTTCACGTTTTTGGCTTATCTTTTCTTTTTCTGTTGTAA 1574 0.3901 PSYDSGTGRTDIDVTSKAKPVIIIGVSASLGSIILLIVLWRLYKVVRKKIVKKRKERFFKRNGGLLLEQRLSSGEVNVDKVKLFSLKDLTKATDHFNVSRVLGKGGQGTVYKGMLTDGKIIAVKKFKLQGNVEEFINEFVILSQINHRNVVKLLGSCLETEIPLLVYEFIPNGNLFEYLHEQNEDLSVTWDMRLRIAAEVAGALFYLHSVASQPIYHRDIKSTNILLDEKYRAKVADFGTSRMVSIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLSGQRPISSLRPGEAKSLASYFILCIEEDRLFDVIDERVIKEGKKEHIIAVANLASRCLELNGKKRPTMKDVTLELEGIRKFVSTSNTQEVHAELDLVRFEDYQSWDKYSTTLNTGKAVLLPGFFSAKLGNLPFSERLYPGTKRKRGGRPSTRSQGSGWSLTRAIQETIQSKASKKKQKDSKSSRDSSRRQVLQRKLSIQREDRVVVVNRGREQLIRQDGIPLLHVFGLSFLFLL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01843 523 MobiDBLite consensus disorder prediction 457 482 - -
Cca08g01843 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Cca08g01843 523 MobiDBLite consensus disorder prediction 458 482 - -
Cca08g01843 523 Pfam Protein kinase domain 97 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01843 523 SUPERFAMILY Protein kinase-like (PK-like) 77 364 IPR011009 -
Cca08g01843 523 Gene3D Transferase(Phosphotransferase) domain 1 170 390 - -
Cca08g01843 523 MobiDBLite consensus disorder prediction 427 446 - -
Cca08g01843 523 ProSiteProfiles Protein kinase domain profile. 96 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01843 523 SMART serkin_6 96 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01843 523 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 386 IPR045274 GO:0007166
Cca08g01843 523 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 17 386 - -
Cca08g01843 523 Gene3D Phosphorylase Kinase; domain 1 68 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01843 Cca-Chr8 50829042 50842311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01843 14 382 Receptor kinase-like Gene Family AT1G69730 58.065 3.44e-151 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Cca08g01843 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01843 - - gsj:114368715 609.372