Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01821 ATGTGCATCAGCCCCATAATCATGGACAATTACCAAGGCGATTTAACTGACATAGTCCGAGCCAGTGGTGGagcagcatcgtatgctagcagcacctgcagcacaggaacagcagcagcaacatcaTCTCAATTACCTACCACCCTCTCTCATAATGATCACTGGCACCAACActtctcttcttcttcttctGACCCCAACATCGCTTTCTCTTCTGTGCTTCAAGACACCAACTTCGGGGATCCATTCTCAACCATGAGAGATCCCTTTCTCCACGAGCTTGACATGCCTTCAGCTTCTGCCACCTACTTCACTGGAGCCTTGGAAGAAGCAGCTCCTACTTTTGCTGCTGCTAATAACACTAGTACTTCTTCTACTGTTTTTGCTCAGGAACATGACATGATGAGAAGGCCTTGTAAAAACATATTCTCAAACATGATTCAGATCTCTCCCAATGCAAAGTTACCCCTCTCACTCTCATCCTATGATTCCACACCCTTGGCACCTTCTCCAAGGCCAATTAAGCCTCCTGCTGTGGTTCCTCCCAACATGGTTAATGCAAACTCCTCCAAGGATTGCCTTGTGGACACCACAGGAGTGCAGATCTCATCTCCACGGAATACGGGTCTTAAAAGAAGGAAGAACCAGTCCAAAAAGGTAGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACCGGAGAGGTTGTTCCGTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATCAAAGGTTCACCTTATCCCAGGGGCTATTACAGATGCAGCAGCTCAAAGGGTTGTTCTGCGAGGAAGCAAGTTGAGAGGAGCAGAACAGACCCAAACATGTTGGTCATTACATACACTTCAGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTGGCTGGTTCAACCCGGTCTCAGCCATCCAAGAACAACAATGCTTCTAATTCAAAGGGCgcaacaacaaaagcaaaggaagagcatcagcaagagagcaaCAATAGTGAGGGCAATGTGTCACCAGTTGTTGGTGGAAACTCAGCAAACAGTGTGAAGGAAGAGAATATGGAAGACATAGAGAAGCAGCTTGAGATGGATGAGGGAGAGTTCAGTGATGGATTGCCTTACAAGCCATGTTTAATGGATCACCAGAGTAATAACAACCAATCTGAGGACTTCTTTGCAGAGTTGGGAGAAATAGAAGCTGACCCACTTGACCTTTTGTTCACTCAAGGTTTTGGTGCAGCTGGTGATGATCAAAGGGAATCCAAGGCCTTAGATCCATTCCATCTGTTTGATTGGTCAGGAGacaccaataccaacaccaacaccaccaacaacaacaCAAGCTCATTTGAAGAACCTAATAATAAGAGAAGGTCATAG 1404 0.411 MCISPIIMDNYQGDLTDIVRASGGAASYASSTCSTGTAAATSSQLPTTLSHNDHWHQHFSSSSSDPNIAFSSVLQDTNFGDPFSTMRDPFLHELDMPSASATYFTGALEEAAPTFAAANNTSTSSTVFAQEHDMMRRPCKNIFSNMIQISPNAKLPLSLSSYDSTPLAPSPRPIKPPAVVPPNMVNANSSKDCLVDTTGVQISSPRNTGLKRRKNQSKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNNASNSKGATTKAKEEHQQESNNSEGNVSPVVGGNSANSVKEENMEDIEKQLEMDEGEFSDGLPYKPCLMDHQSNNNQSEDFFAELGEIEADPLDLLFTQGFGAAGDDQRESKALDPFHLFDWSGDTNTNTNTTNNNTSSFEEPNNKRRS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01821 467 ProSiteProfiles WRKY domain profile. 234 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01821 467 Coils Coil 355 375 - -
Cca08g01821 467 Pfam WRKY DNA -binding domain 241 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01821 467 SUPERFAMILY WRKY DNA-binding domain 237 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g01821 467 SMART WRKY_cls 239 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01821 467 MobiDBLite consensus disorder prediction 264 360 - -
Cca08g01821 467 MobiDBLite consensus disorder prediction 438 467 - -
Cca08g01821 467 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 12 443 - -
Cca08g01821 467 MobiDBLite consensus disorder prediction 339 358 - -
Cca08g01821 467 MobiDBLite consensus disorder prediction 440 460 - -
Cca08g01821 467 Gene3D WRKY domain 213 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g01821 467 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 12 443 IPR044810 GO:0003700
Cca08g01821 467 MobiDBLite consensus disorder prediction 283 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01821 Cca-Chr8 50566366 50570266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01821 1 447 WRKY Transcription Factor Family AT1G30650 45.494 5.52e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca08g01821 WRKY 2.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01821 - - aprc:113852911 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01821 08 50566366 50570266 Cca08g01821 08 50566366 50570266 ECH