Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01814 atgcctctttctcaaatctcaactctcatctctcaCCCAAACCAAGCCAAGGAATCACAGTTCCGATCATGGAAGCTGAAGCCACCACCGCTCCCAAGTTGGCACTCGCCGACACAGACATCAACTGGGACAGGTAGGTTGGATAAAACCAAGTTTCACGTGATTGGCGCCGTTCTCTTCACCGCCCAATCGGCGCTGCTGCATCCGACGGCGGTGGTGAAGACACGGATGCAGGTGGCCGGCGCTCGCCTCTCCCACGTGCGGGGAGCCTCGCTGTTCGCTCACATTCTGCGGAGCGACGGCGTTCCCGGAATCTTCAGAGGTTTCGGCACCTCCGCCGTGGGTTCGGTCCCCGGGAGGGTCCTGGCTCTCACGTCTCTCGAGGTTTCGAAGGACGCCGTCTTGAGACACACGCAGGGCAGTCGCATTCCAGAAGCTTCGCGCGTTGGCCTCGCGAATGCGGTCGCCGGCTTGCTGTCCAATTTGGTTTCTTGTGTCTACTTTGTGCCTTTGGATGTGATTTGTCAGAGGTTAATGGTACAGGGTCTTCCTGGGACAACGTATTGTAGAGGGCCCTTTGATGTCGTTCGTAAAGTTGTGAAGGCTGAGGGGTTTCGTGGCTTGTATAGGGGTTTTGGATTAACCGCTGTAACCCAGTCCCCTGCATCTGCACTTTGGTGGGGTTCATATGCTGCTGCACAACACCTAATTTGGAGGACTTTGGGCTACAAAGATGAAACAGGGAACAAACCTTCACATATGGAAATGGTGACAGTTCAGGCTACTGCTGGGATGGTTGCTGGTGCTTGTTCTTCTGTTATCACTACTCCCATAGATACTGTTAAAACACGTCTTCAGGTTATGGACAACTACGGTTCTGGAAGACCATCGGTACTGAAGACAGCAAAGAGTCTCCTTAAGGAAGATGGATGGTGGGGATTTTACAGGGGGTTTGGACCAAGATTTTTAAACATGTCACTTTATGGAACAACCATGATCGTTACTTATGAACTGATAAagagattatcagttcAACCAAGTTCAAGGTCTTTTACTTGA 1059 0.4958 MPLSQISTLISHPNQAKESQFRSWKLKPPPLPSWHSPTQTSTGTGRLDKTKFHVIGAVLFTAQSALLHPTAVVKTRMQVAGARLSHVRGASLFAHILRSDGVPGIFRGFGTSAVGSVPGRVLALTSLEVSKDAVLRHTQGSRIPEASRVGLANAVAGLLSNLVSCVYFVPLDVICQRLMVQGLPGTTYCRGPFDVVRKVVKAEGFRGLYRGFGLTAVTQSPASALWWGSYAAAQHLIWRTLGYKDETGNKPSHMEMVTVQATAGMVAGACSSVITTPIDTVKTRLQVMDNYGSGRPSVLKTAKSLLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSVQPSSRSFT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01814 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 48 133 IPR018108 -
Cca08g01814 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 255 342 IPR018108 -
Cca08g01814 352 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 40 345 - -
Cca08g01814 352 MobiDBLite consensus disorder prediction 27 46 - -
Cca08g01814 352 SUPERFAMILY Mitochondrial carrier 47 338 IPR023395 -
Cca08g01814 352 PANTHER OS01G0329400 PROTEIN 40 345 - -
Cca08g01814 352 Gene3D Mitochondrial carrier domain 145 349 IPR023395 -
Cca08g01814 352 Pfam Mitochondrial carrier protein 152 238 IPR018108 -
Cca08g01814 352 Pfam Mitochondrial carrier protein 259 343 IPR018108 -
Cca08g01814 352 Pfam Mitochondrial carrier protein 55 135 IPR018108 -
Cca08g01814 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 148 236 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01814 Cca-Chr8 50467934 50471777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01814 46 342 Chloroplast and Mitochondria Gene Families AT5G15640 49.164 3.05e-101 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01814 K15121 - gmx:112997745 558.525