Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01812 ATGGCAACAGCGGAGGCAGCTTCTGCAGGGCTTGGTCCTAGATATGCTCCTGATGATCCCACTCTTCCTCAACCGTGGAAGGGCTTGATTGATGGCAGCACTGGTCTGTTATATTATTGGAATCCTGAAACTAATGTTACGCAGTATGAAAAACCTGCTCCGATAACCCCGGTGCCTGCGCCAGTGGCTTCAACGCCAAGCTTGGCGGCTATACCAGGGGCTCACACAATGCAGCCTGGTGGGATGGCGCAGCAATATGGGCAAGTGCAACCCTCGCAGCAGCAGGTTGGTCACCTTGCCCAACAGCATGGTCAATCTGTGCCAGCAATGCAGCAGCAGCAGCAGAGTCCGCATTTGGCGCAGGTTGCTCAGCAGCAGCCCTCTCAGGGTGCTCAGTCTGGACAGCAGCAGAACCAACAGATGGCACAGTCAGTGCCGCAACATGGGTTACATCAAGCCAGACAGCAAATGATGCAGCCTCAAGGGCAGCAAATGCATCATCAGATGCCGCCTCAGGCTATCCATTCTCAACATTTTGGGCAAGGAACGCCTCAGGACCATGGTTCACACATTGTACAACCACAAGCGCATCAGTTCACTCCCCAAAACATGCATTATATGTCATATCAGCCAAACGTGATTGCATCCAGGCAACCTAACTCCCAGCATGTTCAGCCAAACATGGTCTCTCCTGGGCAACCTAACTCCCAGCAGGTTCAGCATAACATGCATGGTCAGCCCTTTGAAAATCATCAAACAGCATTTCCAAAAGTTGAGGAAGTGGATTTTAAAAATGGAGGCCAGGTTGGACATTCCCCATCCCAGTATTCACAAAGGAGTGCCTTGCCTGTTCAAAACAACCAAAACATTCCTGCTGAAGGTGGTTCTGGTCAAGTGCCTAATGTAGGTGTCACTGCTGGCCAACCACAGCAATTCAGGGCCTTATCAGGCAGTATGCAACAGTCACCCTCTGCAATGCCATTGCAGCAGGGTGGATCTGATTTATATTACCAACATGGTCCTAACTTTCATAACCAGATGAGCCCAAGAATGATGCATGGTCATCCATCCAATGTCCATCCTGCTGGTGCTGGCCAAAATATGGGTCATGAGGATAATATGCGTGGTAGAGCAGGGAGCGAATATTACTATAATTCTAACAAAGAAATATCAACAATGGGTCGTCAGCAGCCAGATATGACTCAAATATCCATTCCGAGAAATCAGCAGGATATGAGGATTGGAAATGCTCCTTTTCAAAATGTAATGCCTAGTGGAAATGGAAGTGGTGTTGCTGGGAATGCTATGCATGGCATGTTTGCTCCTCCGATTGGAGGACCTTCATCTCTCTCTACTAATTCTTTGATGAGGCCTCCTTATATAGGATCTTCTGATGTTACTGATCTCTCACCAGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCTCCACCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGCTTCTCAAGTCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATAGTAGCAATTGCCAAGACAGGCTCTGGGAAAACACTAGGCTACTTACTACCTGCCTTTATTCTTCTTAGACAGCGACATAATAATTCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGCGAACTTGCGACACAGATCCAAGATGAGGTCATCAAATTTGGTCGATCATCACGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCTCTTCAACTAAAAGAGTTAGATCGGGGAGCAGATATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTATCACTGCTTGTGCTTGATGAGGCTGATCGGATGCTTGATATGGGTTTTGAGCCTCAAATTCGAAAGATTGTGAATGAGATTCCACCACGCAGACAAACTCTCATGTACACAGCCACTTGGCCAAAAGAAGTAAGAAAAATTGCTGGTGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAGTGTAGATGAGCTTGCTGCAAATAAAGCTATTACACAGTATGTTGAGGTTGTCCCACAAATGGAGAAACAGAGGCGTTTGGAGCAGATCCTCAGATCCCAGGAACGAGGTTCCAAGGTCATAATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCTCGTAGTATTGGTCGGACTTTTGGGGCTGCTGCAATTCATGGGGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTAAGTCAGTTCCGGAGTGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCAGCTCGTGGGCTAGATATTAAGGATATAAGGGTGGTGATCAATTATGATTTCCCCACCGGAATAGAGGACTATGTGCACCGTATAGGAAGAACTGGAAGAGCAGGTGCTACTGGAGTATCATATACCTTTTTTTGTGAGCAGGACTGGAAACATGCAGGTGATTTAATCAAAGTATTGGAGGGTGCTAATCAGCATGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGCCACCAAACTTTGGAAAGGAACGGGGTGGGATGAGTCGGTTTGATTCTGGTGGTGGTGGTGGGCGTTGGGAATCTGGTGGTCGTGGTGGCATGAGGGATAGTGGCTTTGGTGGTCGTGGGGGTGGCATGAGGGATGGTGGGTTTGGTGGGCGTGGTGGTGGGTTTGGTGGACGTGGTGGTGGCATGAGGGATGGCGGTTTTGGTGGACGTGGCGGCGGCTTTGGTGGTCGTGGGGGCATGAGGGATGGAGCTAGTGGGCAAGGTGGAAGAGGTGATTTCTTTCCAGGTAGGGGCAACAGGGGTAGGGGATCTGGTGGCCCTCGTGGGGGTCATGTTGGTTGGGGTAGGGGTGAACGTGGTCTGGATGATCGATACAACATGGATGGGCGTGGACAAGGTCGAGGACGTGGGCGATTTGACAATAGAAGAGATGTTTCTTACAAAAATAGAGGcagaagtcgtagccctgagagagtccgaacatgggattatagcagaagtagcagcagaagtcgtagcagaagtagaagcaggagcaggagttggagcaggggccgtagtcgaagccgcagctggtctcgtgatcgtagtcgcagctatagccgtagtattagtcctcgacgtagtcgcagtcgtagccgtggtcgaagttacagtcgtagtcgtagccgtagCCGCAGCAGCCCCAGATATGATAGGCGTGATAGGTCAGATCAACAACATCCTGATCAAAAGGATCTTAGGTCACAGGATGTAGGAACTTCGGATCCAAAAATGCCTCCCATGTCTGCCAGCACACCAGGGAATTCCTTTGTTGGAGCTGAGGAAGTGGAGCCCCAACCTGTAGTTGGGAGCACTGATCTTGGTAACCCAGAAGCTGTAGCAGACCTTAGCCATCAACCAGCTTCTGATATTTAG 3540 0.4542 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPITPVPAPVASTPSLAAIPGAHTMQPGGMAQQYGQVQPSQQQVGHLAQQHGQSVPAMQQQQQSPHLAQVAQQQPSQGAQSGQQQNQQMAQSVPQHGLHQARQQMMQPQGQQMHHQMPPQAIHSQHFGQGTPQDHGSHIVQPQAHQFTPQNMHYMSYQPNVIASRQPNSQHVQPNMVSPGQPNSQQVQHNMHGQPFENHQTAFPKVEEVDFKNGGQVGHSPSQYSQRSALPVQNNQNIPAEGGSGQVPNVGVTAGQPQQFRALSGSMQQSPSAMPLQQGGSDLYYQHGPNFHNQMSPRMMHGHPSNVHPAGAGQNMGHEDNMRGRAGSEYYYNSNKEISTMGRQQPDMTQISIPRNQQDMRIGNAPFQNVMPSGNGSGVAGNAMHGMFAPPIGGPSSLSTNSLMRPPYIGSSDVTDLSPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSSPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLLPAFILLRQRHNNSLNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRTFGAAAIHGDKSQGERDWVLSQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFCEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPPNFGKERGGMSRFDSGGGGGRWESGGRGGMRDSGFGGRGGGMRDGGFGGRGGGFGGRGGGMRDGGFGGRGGGFGGRGGMRDGASGQGGRGDFFPGRGNRGRGSGGPRGGHVGWGRGERGLDDRYNMDGRGQGRGRGRFDNRRDVSYKNRGRSRSPERVRTWDYSRSSSRSRSRSRSRSRSWSRGRSRSRSWSRDRSRSYSRSISPRRSRSRSRGRSYSRSRSRSRSSPRYDRRDRSDQQHPDQKDLRSQDVGTSDPKMPPMSASTPGNSFVGAEEVEPQPVVGSTDLGNPEAVADLSHQPASDI 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01812 1179 CDD SF2_C_DEAD 712 841 - -
Cca08g01812 1179 MobiDBLite consensus disorder prediction 1062 1076 - -
Cca08g01812 1179 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Cca08g01812 1179 MobiDBLite consensus disorder prediction 1045 1061 - -
Cca08g01812 1179 MobiDBLite consensus disorder prediction 1077 1097 - -
Cca08g01812 1179 Pfam WW domain 22 52 IPR001202 GO:0005515
Cca08g01812 1179 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Cca08g01812 1179 MobiDBLite consensus disorder prediction 989 1044 - -
Cca08g01812 1179 Gene3D - 703 873 IPR027417 -
Cca08g01812 1179 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 493 521 IPR014014 GO:0003724
Cca08g01812 1179 CDD WW 23 54 IPR001202 GO:0005515
Cca08g01812 1179 MobiDBLite consensus disorder prediction 81 190 - -
Cca08g01812 1179 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Cca08g01812 1179 MobiDBLite consensus disorder prediction 1 27 - -
Cca08g01812 1179 MobiDBLite consensus disorder prediction 219 242 - -
Cca08g01812 1179 SMART helicmild6 748 832 IPR001650 -
Cca08g01812 1179 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 727 871 IPR001650 -
Cca08g01812 1179 Pfam Helicase conserved C-terminal domain 724 832 IPR001650 -
Cca08g01812 1179 MobiDBLite consensus disorder prediction 1099 1126 - -
Cca08g01812 1179 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 524 698 IPR014001 -
Cca08g01812 1179 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 282 972 - -
Cca08g01812 1179 SMART ultradead3 512 715 IPR014001 -
Cca08g01812 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 847 IPR027417 -
Cca08g01812 1179 SMART ww_5 21 54 IPR001202 GO:0005515
Cca08g01812 1179 MobiDBLite consensus disorder prediction 873 1179 - -
Cca08g01812 1179 MobiDBLite consensus disorder prediction 73 190 - -
Cca08g01812 1179 Gene3D - 469 702 IPR027417 -
Cca08g01812 1179 Pfam DEAD/DEAH box helicase 517 687 IPR011545 GO:0003676|GO:0005524
Cca08g01812 1179 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 644 652 IPR000629 -
Cca08g01812 1179 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 282 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01812 Cca-Chr8 50451440 50459398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01812 481 870 Eukaryotic Initiation Factors Gene Family AT3G19760 34.015 6.81e-65 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01812 K12823 - gmx:100807830 1469.14