Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01805 ATGATCGTGAGGCAGAAGATGGTGACGGAAGCGGAAATCATGTGCCAGCAGAGCATTCCGATGTTGGACGTCAAGTACCACCTTCGTGTGGCGCAAGAACACGCCGTTAAGGTCGACGTCGTTTCGCCCTCCTCCAACGTCGTTCCTGTATTTGCCCACGTGCGGCTTGAGACGGTTTCCGCTGAAACGCCTTGTTTCGAATCGGTTGTGAGTTGTTCTGAGATGATTGAGGATTCCGTTTTAGAGAGTCCTGCTACGAAATTTATACCAAATGTTCGATCTGGGTGCTGTATGGATATTGGACCCAGGGGGTCAATGGATGATGAGCACATTCGGATAGATGATCTTGCTGGCCACCTTGGATTTGTGTTCAAGCAGCCAATACCCAGTGCGTTTTATGCGGTTTTTGATGGGCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGAACAATGCTATGAGATTGTTTTTTGAGGATGCTGATATGCTGCAATCATATGATGCTGATGCAGTTTCTCTCAAGAGGTTGGAAGATTCTCATAGGAGAGCTTTTCTGGGTGCGGACCTTGCTTTGGCTGATGAACAAAGTGTTTGCAGTTCCTGTGGGACAACGGCGTTGACTGCCCTTGTACTTGGAAGGCATTTGATGGTTGCTAACGCCGGTGACTGTCGAGCTGTTCTTTGTCGGCGAGGGCTGGCTGTTGATATGTCTCAAGATCACAGACCAAGTTATTTACCAGAACTCCGGAGGGTGGAGGAGTTGGGTGGTTTCATTGATGATGGTTATCTCAATGGCTATCTTTCTGTGACTCGTGCCCTTGGGGATTGGGACTTGAAATTCCCACTTGGTTCTGCATCGCCTCTTATCGCCGAGCCCGAGGTTCGGGTGGTCGCATTGACGGAGGATGATGAATTCTTGATCATCGGGTGTGATGGCATTTGGGATGTAATGTCAAGCCAGGAAGCAGTTAGTCTTGTGAGGCGTGGATTAAGGAGGCATGATGATCCACAACAATGTGCAAGAGAGCTTGTTAAGGAAGCATTGCGCTTACACACATCAGATAATCTTACTGGGATTGTTATCTGCTTGTCACCTGTGCAAAGCATTGTTGAATCATGTCCACCCCAGAGGAGAAGATTCAGATCTTGCTCTCTGTCTGAAGAGGCCCGGAACAGATTGAGGAACTTGCTAGAGGGAAACTGA 1203 0.4855 MIVRQKMVTEAEIMCQQSIPMLDVKYHLRVAQEHAVKVDVVSPSSNVVPVFAHVRLETVSAETPCFESVVSCSEMIEDSVLESPATKFIPNVRSGCCMDIGPRGSMDDEHIRIDDLAGHLGFVFKQPIPSAFYAVFDGHGGPDAAAFVKNNAMRLFFEDADMLQSYDADAVSLKRLEDSHRRAFLGADLALADEQSVCSSCGTTALTALVLGRHLMVANAGDCRAVLCRRGLAVDMSQDHRPSYLPELRRVEELGGFIDDGYLNGYLSVTRALGDWDLKFPLGSASPLIAEPEVRVVALTEDDEFLIIGCDGIWDVMSSQEAVSLVRRGLRRHDDPQQCARELVKEALRLHTSDNLTGIVICLSPVQSIVESCPPQRRRFRSCSLSEEARNRLRNLLEGN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01805 400 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 7 387 - -
Cca08g01805 400 Pfam Protein phosphatase 2C 103 355 IPR001932 -
Cca08g01805 400 ProSiteProfiles PPM-type phosphatase domain profile. 93 363 IPR001932 -
Cca08g01805 400 Coils Coil 386 400 - -
Cca08g01805 400 SMART PP2C_4 83 361 IPR001932 -
Cca08g01805 400 Gene3D - 79 367 IPR036457 -
Cca08g01805 400 SMART PP2C_SIG_2 108 363 IPR001932 -
Cca08g01805 400 PANTHER PROTEIN PHOSPHATASE 2C 7 387 IPR015655 GO:0004722|GO:0006470
Cca08g01805 400 CDD PP2Cc 93 363 IPR001932 -
Cca08g01805 400 ProSitePatterns PPM-type phosphatase domain signature. 132 140 IPR000222 GO:0043169
Cca08g01805 400 SUPERFAMILY PP2C-like 88 365 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01805 Cca-Chr8 50394613 50396803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01805 1 399 PP2C-type Phosphatase Gene Family AT1G48040 57.568 8.47e-146 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01805 K14803 - gmx:100798957 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01805 08 50394613 50396803 Cca08g01805 08 50394613 50396803 ECH
Cca11g02655 11 53908737 53911401 Cca08g01805 08 50394613 50396803 PCT