Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01801 ATGGAAGTGAAAGGAAGGTTATGCAACAACTCCACCACCATCCAAAGCGAGGATGAGATGGATCTTCGAAGAGGCCCTTGGACCGTTGATGAAGACCTTGCTCTCATCAATTACATTGCTAATCATGGAGAAGGTCGATGGAACTCCCTAGCCCGTTCTGCCGGACTCAAACGAACTGGCAAGAGCTGCAGATTGAGATGGTTGAATTATCTTCGTCCTGATGTTCGACGTGGCAACATCACACTCGAAGAACAGCTTCTTATTCTCGAGCTCCATGGTCGTTGGGGAAACCGATGGTCCAAAATTGCTCAATATTTGCCCGGAAGAACCGATAATGAGATTAAGAACTATTGGAGAACCCGTGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCTATGCGTTACCTTTGGATGCCAAGGCTTGTGGAACGCATTCAAgccgccgccgccgctgccactaccaccgccgctgctgccACTACTGGTTCACCGGCAAGTGCTactactaccataacgaacaacaatattgcatacaacaactatgacaataacaacattaacaacaaTATTGAGGTTCATAGTGGGAACATGATGATGAGTTCAGCTATTATGAAGAACAACTTTGGCGGTTCACATGTTACACATAGTTACACTCCGGAGAATAGTAGCACGGGTGCATCATCGGACTCGTTTGGGACTCAGGTTTCACCTGTATCGGACATGACTCAGGATTATTACAATAATGTCACGGTTGGTGGTAACAATAACCATAACCCTAATCCTGATTACTACCACCAACAAGCTCATGATCAACTCAGCTTCTTAGATTGCATCACTAGCCCATCAGGGTTGTTCCCTCATGAGATGGATTTCGAATCCATGGAACCAAACACCCCGTGGATTCAGAATAATGGAGACTCGTCCAACGGTTTCTGGAACGTTGAAAACATGTTGCTCTTTCAACAACTCTCGGACAACATGTGA 1011 0.4065 MEVKGRLCNNSTTIQSEDEMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAAATTTAAAATTGSPASATTTITNNNIAYNNYDNNNINNNIEVHSGNMMMSSAIMKNNFGGSHVTHSYTPENSSTGASSDSFGTQVSPVSDMTQDYYNNVTVGGNNNHNPNPDYYHQQAHDQLSFLDCITSPSGLFPHEMDFESMEPNTPWIQNNGDSSNGFWNVENMLLFQQLSDNM 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01801 336 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Cca08g01801 336 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Cca08g01801 336 CDD SANT 92 120 IPR001005 -
Cca08g01801 336 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Cca08g01801 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Cca08g01801 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Cca08g01801 336 PANTHER MYB TRANSCRIPTION FACTOR 1 333 - -
Cca08g01801 336 Gene3D - 21 77 - -
Cca08g01801 336 Gene3D - 81 144 - -
Cca08g01801 336 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Cca08g01801 336 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Cca08g01801 336 CDD SANT 26 71 IPR001005 -
Cca08g01801 336 SMART sant 23 73 IPR001005 -
Cca08g01801 336 SMART sant 76 124 IPR001005 -
Cca08g01801 336 MobiDBLite consensus disorder prediction 223 243 - -
Cca08g01801 336 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 333 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01801 Cca-Chr8 50281040 50283238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01801 1 323 MYB Transcription Factor Family AT3G06490 53.666 6.05e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca08g01801 Myb_DNA-binding 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01801 K09422 - gmx:100805341 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01801 08 50281040 50283238 Cca08g01801 08 50281040 50283238 ECH