Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01793 ATGCAGACAAATTGCAGAAAACTTGATTTGCAGGAGCAGCTCCCTGAGACAGAGACAAAGCCTGAAAATTCGAGGTTTAGGATCAAATACAGCAGGAGGAGACCACTAAAAGAATCAAAGTTTAAAAAAGGGAGAATAGTGGAAGTCAGCCAGGATGACAAAGGTTATAAGGGTGCTTGGTTTCTTGCTACTATTGTTGAAATAGTAGGAAAAGACAGGTTTCAAGTAGAATATAGGGACCTGAAGACCAATGGTGGCATCCAACACTTGAAAGAAGTAATTGATGCAAGGTTTATTAGGCCATGCCCCCCTGAAGTTCCTTTTGCTGGTTCTTTCAAACAATTCCAAGAAATTGATGCATGGTATAATGATGGCTGGTGGGAAGCCGTGGTTCTTGAAGTACTGAGTAACAGAGAATGTTTGGTTTCTTTCATTCACAATGGTGTATTGAAATTTGAAAACTCTAAACTAAGGCCTCATCAAGACTGGTTGGATGGAAAATGGGTGATGTCTTCCAAGCAATCAAGTGAGCTGGCAAAGAAGTATGCAGATCTGAAGCCTAAAACCAAGAATCTCACTGGAATTAAATTAGTCTTGAAACGTCAAAAGCCTAGTGAGAGTTCAAAGAAGCCTAGAGATGTAATGGCAAGGACCACAAACACCCAAAGCAAATCTGTGGTACATCTCTGTAAAGGTGCAAAGGTAGAAGTCAGAAGTGATGAAGAAGGCTACCAAGGTGCCTGGTATACTGCCATTGTTGTCGACTCTTTACAGAATGGCAAGTACTTGGTGGAGTATTTGACCCTGAAAACTGATGACTTAACTGAACAACTGAAAGAAGAAGCAGATGTTTCAGATATCAGGCCATATCCACCAGATGTCAAACATGTTCACCACTTTGTGCTGCGTGAAATGGTTGATGCTTGGTATAATGAAGGATGGTGGGTAGGTCAGGTATCTAGTGTTCTTCTTGGCTTCAAGTATAAGGTTTACTTTTGGCCTACAAAGGAGGAGATGGAATTTGAGCATTGTCATCTGAGGCCTCATCAAGAATGGAGTGATGGAAAATGGGTGCTTGCTTCTTTGGCTCTAAGAAGCACAAACACTCATCTTGCTTGGGGTATCCGAGTGTAG 1134 0.4162 MQTNCRKLDLQEQLPETETKPENSRFRIKYSRRRPLKESKFKKGRIVEVSQDDKGYKGAWFLATIVEIVGKDRFQVEYRDLKTNGGIQHLKEVIDARFIRPCPPEVPFAGSFKQFQEIDAWYNDGWWEAVVLEVLSNRECLVSFIHNGVLKFENSKLRPHQDWLDGKWVMSSKQSSELAKKYADLKPKTKNLTGIKLVLKRQKPSESSKKPRDVMARTTNTQSKSVVHLCKGAKVEVRSDEEGYQGAWYTAIVVDSLQNGKYLVEYLTLKTDDLTEQLKEEADVSDIRPYPPDVKHVHHFVLREMVDAWYNEGWWVGQVSSVLLGFKYKVYFWPTKEEMEFEHCHLRPHQEWSDGKWVLASLALRSTNTHLAWGIRV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01793 377 Gene3D - 31 112 - -
Cca08g01793 377 Gene3D - 217 299 - -
Cca08g01793 377 MobiDBLite consensus disorder prediction 1 25 - -
Cca08g01793 377 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 363 - -
Cca08g01793 377 MobiDBLite consensus disorder prediction 11 25 - -
Cca08g01793 377 SMART agenet_At_2 298 354 IPR014002 -
Cca08g01793 377 SMART agenet_At_2 110 165 IPR014002 -
Cca08g01793 377 SMART agenet_At_2 39 107 IPR014002 -
Cca08g01793 377 SMART agenet_At_2 227 295 IPR014002 -
Cca08g01793 377 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 9 363 - -
Cca08g01793 377 Pfam Agenet domain 232 292 IPR008395 -
Cca08g01793 377 Pfam Agenet domain 45 104 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01793 Cca-Chr8 50169110 50175754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01793 238 362 PHD Transcription Factor Family AT5G58610 27.273 6.22e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01793 - - adu:107483399 484.567