Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01779 gagctactaccgttgcaccagcgcggcttgcggcgtgaagaagcgcgtggagcgttcctccgaagacccttccatcgtggttaccacctacgagggcacgcacacccacccTTGCCCTGCTTCCTCACGGGCCACCTTCGCCTTCCTTCCCCACCCTCCTCCCACCGCCGCTTCTTTCGCTTCCCCTCACTTTCTCCTCCCACCTCACCACCAACCCTCGCCTTTTAGCTCCACCACTAACTACATCAACACCACCTCCTTCGCTCACCTTGGACACGACCCTTTGTCCAGAGACCATGGCTTGCTTCAGGACATTATTGTCCCAACAAATCTCAGGAAGGAGGAAAAGGATTCAATGATTAATTCTTCGCATAGAAAAAAATGA 385 0.3688 SYYRCTSAACGVKKRVERSSEDPSIVVTTYEGTHTHPCPASSRATFAFLPHPPPTAASFASPHFLLPPHHQPSPFSSTTNYINTTSFAHLGHDPLSRDHGLLQDIIVPTNLRKEEKDSMINSSHRKK 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01779 127 Gene3D WRKY domain 1 40 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g01779 127 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 1 73 - -
Cca08g01779 127 SUPERFAMILY WRKY DNA-binding domain 1 39 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g01779 127 Pfam WRKY DNA -binding domain 1 37 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01779 127 SMART WRKY_cls 1 38 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01779 127 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 73 IPR044810 GO:0003700
Cca08g01779 127 ProSiteProfiles WRKY domain profile. 1 39 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01779 Cca-Chr8 50007549 50008349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01779 1 126 WRKY Transcription Factor Family AT5G49520 41.509 5.14e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca08g01779 WRKY 2.6e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01779 - - gmx:100127422 147.132