Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01778 ATGGCGGAGGAGAAAAGAGAAGAGCAAGCGCACCCCAACAACGCATCCTCCACCACCATGCCATTCTCCGACGAGATTCCCAACAATAACTTCACTTTCCCTTTCCAACCACCCACCGTCTTCGACGCCATGCCACCCTCTTCCTCCTCCTCCCACTACAAGCCCTCCTATGGCTTCATGGACTTGCTCGCCGTCCACGACTACAACGCCCCGCTATTCGACTGGCTCCCCTGCGCCGCCGACCACGACCACGTCTTCCACCACCATGCTCCGTCGCCGGACGTCCCGGACTCCTCCGAGGTGCTGAACACGCCGCCCTCGCCCAATTTGTCTTCGATTTCCTCCTCTTCCAATGAGGCCACCGCCACAGTCAGCAACAACGTGGAACAACACAGTGGTAAACCTCCGAATATTGAACAGGCAGAGGAAGAGGGTGGTAATGGAGTCAGAGATGAGCAAGATCAAGACAAGACTGATAAACAGGTGAAACCgaagaagaagaagcaaaagaagCAAAgagaagcgagatttgcgttcatgacgaagagcgagattgatcacttagacgatgggtataagtggcgcaagtacgggcaaaaagctgtgaaaaacagcccttatcccaggTA 629 0.442 MAEEKREEQAHPNNASSTTMPFSDEIPNNNFTFPFQPPTVFDAMPPSSSSSHYKPSYGFMDLLAVHDYNAPLFDWLPCAADHDHVFHHHAPSPDVPDSSEVLNTPPSPNLSSISSSSNEATATVSNNVEQHSGKPPNIEQAEEEGGNGVRDEQDQDKTDKQVKPKKKKQKKQREARFAFMTKSEIDHLDDGYKWRKYGQKAVKNSPYPR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01778 209 MobiDBLite consensus disorder prediction 1 35 - -
Cca08g01778 209 SUPERFAMILY WRKY DNA-binding domain 180 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g01778 209 ProSiteProfiles WRKY domain profile. 183 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01778 209 Gene3D WRKY domain 175 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g01778 209 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 56 209 - -
Cca08g01778 209 MobiDBLite consensus disorder prediction 12 35 - -
Cca08g01778 209 MobiDBLite consensus disorder prediction 89 175 - -
Cca08g01778 209 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 56 209 IPR044810 GO:0003700
Cca08g01778 209 Pfam WRKY DNA -binding domain 189 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01778 209 MobiDBLite consensus disorder prediction 97 134 - -
Cca08g01778 209 MobiDBLite consensus disorder prediction 144 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01778 Cca-Chr8 50006353 50007405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01778 158 209 WRKY Transcription Factor Family AT2G47260 78.846 4.54e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca08g01778 WRKY 6e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01778 - - gmx:100127422 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01778 08 50006353 50007405 Cca11g02676 11 54164635 54174238 PCT