Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01775 ATGTCGTCATCTCTCACCGCAAATCCAACCCTCGCCGCCGATCGCTCACGTGACTCGCACAGGACCAAGAAGAAGAAGAAATCTCCAACCAAACACACCCCCGCCAAATGGAAATCCCACGCGCAGCAGCACCTCTACTCGACCAAGCTCCACCAGGCCCTCCGCAGAGTCAACATCTCAGGCGACGCGCCCCGCCGCGGAAAGGCCGTCCGTGAGGCCGCCGACAGGGTGCTCGCCGTCGCCGCCCGGGGGAGGACCCGCTGGAGCCGCGCCATCTTGACCCACCGCCTCAAGCTCAAGTTCAGGAAGCCGAGCCACAAGAGGCACAAAGTGGTTGGGCCGGCCCGCCCCAAGAAGCCCCGCTTCGGCGTCCTCCGCCTCAAGGCCAAAACCCTCCCCGCCGTCCAACGGAAAGTCAGGTTCCTGGGCCGCTTGGTCCCCGGTTGCCGGAAAGAACCGCTTCCCGTGATTCTCGAAGAAGCAATCGATTACATCCCCGCGCTCGAGATGCAGGTTCGAGCCATGGCAGCTCTCGCTGACTTACTCTTAGGctcttcctcctccgcctccgccgctgcatccacctcctcGCCACCCAATTGA 603 0.5904 MSSSLTANPTLAADRSRDSHRTKKKKKSPTKHTPAKWKSHAQQHLYSTKLHQALRRVNISGDAPRRGKAVREAADRVLAVAARGRTRWSRAILTHRLKLKFRKPSHKRHKVVGPARPKKPRFGVLRLKAKTLPAVQRKVRFLGRLVPGCRKEPLPVILEEAIDYIPALEMQVRAMAALADLLLGSSSSASAAASTSSPPN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01775 200 CDD bHLH_AtIBH1_like 124 173 IPR044549 GO:0006355
Cca08g01775 200 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 15 198 IPR044660 GO:0006355
Cca08g01775 200 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 15 198 - -
Cca08g01775 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 184 IPR036638 GO:0046983
Cca08g01775 200 MobiDBLite consensus disorder prediction 19 38 - -
Cca08g01775 200 MobiDBLite consensus disorder prediction 1 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01775 Cca-Chr8 49941032 49941634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01775 36 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 57.500 4.10e-51 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01775 - - ccaj:109791193 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01775 08 49941032 49941634 Cca08g01775 08 49941032 49941634 ECH
Cca11g02678 11 54209963 54230704 Cca08g01775 08 49941032 49941634 PCT