Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01773 ATGCACCAGCCATTCATGAGTCTTATCGCGCACTGTTGGAAGCCGTTCGGGCTCGCCGCTGACGACGCCTCCGCCGCCAATGCCGGACGAGAATGCAAAGACGGCCTCCTCTGCTTCCGCGACATCGGAAAACTCTCCGCCGGCGATTTCTCCATGGCCGTCGTCCAGGCCAACCAGGTCCTCGAGGACCAGTGCCAGATCCACTCCGGCACCTTCGGCACCTTCCTCGGCGTCTACGACGGCCACGGCGGCCCCGATTGCTCCCGCTACGTTTGCGATAACTTGTTCCGTAATCTCCAAGCGGTATTGTTGGCTGAGTCACGCAGTGTTGTGACGGCTGAGGACATTCAACAGGCGTTCCAGCGGACTGAGGAAGGGTTCACGGCGCTTGTTTCTGAGCTGTGGAGCACTCGGCCGCAGATTGCCACTACCGGGACGTGTTGTTTGGTTGGAGTTATTTGTCGGCAGACGCTCTTTGTAGCGAATCTCGGAGATTCCCGTGCCGTGTTAGGTAGGAGAGTTGGCAACACCGGTGGGGTGGCTGCGATTCAGCTGTCGACGGAGCACAATGCGAATATTGAGGCTGTTAGGCGGGAGCTTAAGGAATTACACCCGGATGACCCCCAGATTGTTGTTCTCAAACATGGGGTGTGGAGAGTAAAGGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCCATTAATGCAAAATTCAGACTTCCTGAACCAATGAACATGCCTTTCTTGTCTGCTAATCCAACTATTATTTCTCATCCTCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTTAGTAATGATCAAGCAGTGGAAATTGTTCACAGCAGTCCACGAGCGGGTAGTGCCAAGAGACTGGTGAAGGCTGCCCTACAAGAAGCAGCCAGAAAACGTGAAATGCGATATTCAGACCTTTATAAGATTGACAAGAAGGTTCGTCGCCATTTTCACGATGATATAACTGTCATTGTTTTATTCTTAAACCACGACCTTATATCCAGAGGCGCAGTTCTAAATCCGCCACTCACAATTCGAAGTGCTCTCGATCACTGA 1125 0.5138 MHQPFMSLIAHCWKPFGLAADDASAANAGRECKDGLLCFRDIGKLSAGDFSMAVVQANQVLEDQCQIHSGTFGTFLGVYDGHGGPDCSRYVCDNLFRNLQAVLLAESRSVVTAEDIQQAFQRTEEGFTALVSELWSTRPQIATTGTCCLVGVICRQTLFVANLGDSRAVLGRRVGNTGGVAAIQLSTEHNANIEAVRRELKELHPDDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMNMPFLSANPTIISHPLQPNDSFLIFASDGLWEHLSNDQAVEIVHSSPRAGSAKRLVKAALQEAARKREMRYSDLYKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNPPLTIRSALDH 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01773 374 Pfam Protein phosphatase 2C 74 321 IPR001932 -
Cca08g01773 374 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169
Cca08g01773 374 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 4 374 - -
Cca08g01773 374 ProSiteProfiles PPM-type phosphatase domain profile. 49 351 IPR001932 -
Cca08g01773 374 SUPERFAMILY PP2C-like 58 352 IPR036457 -
Cca08g01773 374 Gene3D - 41 359 IPR036457 -
Cca08g01773 374 PANTHER ALPHABET, ISOFORM E-RELATED 4 374 - -
Cca08g01773 374 CDD PP2Cc 50 351 IPR001932 -
Cca08g01773 374 SMART PP2C_4 43 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01773 Cca-Chr8 49896777 49902547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01773 5 371 PP2C-type Phosphatase Gene Family AT4G38520 58.245 1.04e-153 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01773 K01102 - gmx:100813333 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01773 08 49896777 49902547 Cca08g01773 08 49896777 49902547 ECH
Cca11g02684 11 54268864 54273014 Cca08g01773 08 49896777 49902547 PCT