Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01771 ATGGCTTCCTCTTCATCCTTGTCTTTGCATAATGCTTCATCAATATTCATAGTGGCAATTCTCAATTTTTGCATGTTATATTGTGCTCTTGGCTATGATGGACAAACAGTTGCAGACTCTCCTTTGTTAACAGAAAAGTTAGGAATTAATCGTACTATCAAAGTAGATATCAATGGCAATGGGGAGTTCAATTCTGTCCAAGCTGCCATAGATTCCATTCCTGAAGATAATTCTAATTGGGTCATTGTACATGTTAGAAAAGGACTATATAGAGAAAAGGTGCATATACCAGAGAATAAGCCTTATATTTTCATGAGAGGGAATGGGAGAGGAAAAACTGCCATAGTTTGGTCTCAGAGCTCTTCTGACAACGTGGCATCTGCAACCTTCAAAGTTGAAGCACATGACTTCATTGCCTTTGGAATTAGCTTCAAGAATGAAGCACCTACAGGGGTTGCTTATACATCGCAAAACCAATCGGTGGCAGCATTTGTGGCAGCAGACAAAATAGCATTTTATCATTGTGCATTTTACAGTACTCATAACACTCTTTTTGATTACAAAGGTAGACATTACTATGATAACTGCTACATCCAAGGCTCAATTGATTTCATATTTGGTCGTGGTAGAACCATCTTCCATGATTGTGAAATGTTTGTGGTTGGTGACAAAAGGGTAACAATTCATGGTTCAATCACGGCTCAAAACAGGGAAAGTGAAGGTGAAATGAGTGGTTTTATCTTCCACAAATGCAAGGTTTATGGCATTGGTGGGGTGTACCTAGGAAGGGCCAAGGGTCCTTATTCTAGGGTCATTTTTGCTAAGTCCTATCTCTCCGTGACCATTGTCCCAGAGGGGTGGACTAATTGGAGCTATGACGGTAGTACAGAAAATCTATACCATGCGGAGTACAAATGCCATGGACCTGGAGCTTTTACAGCACATCGTGCTCCTTGGTCGAGGCAACTAACTGAAGAAGAAGTTGTTCCCTTTATATCTATTGATTACATTGATGGTAAGAATTGGTTGCCAGTATGGGTTGATTAA 1047 0.4011 MASSSSLSLHNASSIFIVAILNFCMLYCALGYDGQTVADSPLLTEKLGINRTIKVDINGNGEFNSVQAAIDSIPEDNSNWVIVHVRKGLYREKVHIPENKPYIFMRGNGRGKTAIVWSQSSSDNVASATFKVEAHDFIAFGISFKNEAPTGVAYTSQNQSVAAFVAADKIAFYHCAFYSTHNTLFDYKGRHYYDNCYIQGSIDFIFGRGRTIFHDCEMFVVGDKRVTIHGSITAQNRESEGEMSGFIFHKCKVYGIGGVYLGRAKGPYSRVIFAKSYLSVTIVPEGWTNWSYDGSTENLYHAEYKCHGPGAFTAHRAPWSRQLTEEEVVPFISIDYIDGKNWLPVWVD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01771 348 Gene3D - 47 346 IPR012334 -
Cca08g01771 348 SUPERFAMILY Pectin lyase-like 49 345 IPR011050 -
Cca08g01771 348 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
Cca08g01771 348 PANTHER PECTINESTERASE 67-RELATED 9 346 - -
Cca08g01771 348 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 9 346 - -
Cca08g01771 348 Pfam Pectinesterase 54 339 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01771 Cca-Chr8 49866022 49867964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01771 50 343 Carbohydrate Esterase AT5G47500 39.145 4.40e-75 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01771 - - gmx:100792967 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01771 08 49866022 49867964 Cca08g01771 08 49866022 49867964 ECH