Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01768 ATGGGAACCCCACaagaagaagaaggagaagaGGTTCTGAAAAAGATAGAACGCCTAGAAGCTGGTCACGCTCACCTCAAGCAAGAAATGTCCAACCTCAAGCTCCTCCAAGACAACAGGTCTCGTTCAAGGTTGGCTTCTGCCACGTGTAACAAGCCCTCTTCTTCTTCTCTGCATCAAAATGATACCAACTATCTCAACATCTTGCAGTCAATGGGCCACTCTGTTCATGTATTGGATCTTCAATGTCGTATCATATACTGGAACCCTAGTGCTGAAAATCTGTATGGTTATGCAGCAGAAGAAGTTCTTGGGCGGGATGGGATTGAGATGCTTGTGGATCACAGGGATTTTGCCTTAGCAAATGATTTATTCAACCATGTCAAAATGGGAGAGAGTTGGAGGGGCCAGTTCCCTGTTAAGAATAAGAAAGGGGATAGGTTCTATGCTGTGGCTACCAATACACCTTTCTATGATGATGATGGAAGCTTGGTTGGCGTTATTTGTGTCTCATGTGATTCCCGGCCCTTTCTTGAAGCCACAGTTCCCTTTTCAGGTGGAAAGAATGCAGAATTGGATTCGGGTTCGAACGGTGTTAGGAGTAGCATTAGTGATAAACTTGGCCTTGACTCACAGCAGCCACTTCAAGTTTCTCTGGCATCAAAAATTTCAAATTTGGCGTCAAAGGTGAGTAACAAAGTTAAGTCTAGAATCCGGACGGGAGATAATAATGTCATTCGTGAAGGTGGGAGCGGAGGAAGTCATCATTCTGAGCATAGTTTCTCGGATTGTGCACTTTCTGACCAGAGAGATGATGGTAATTCAAGTGGAGCTAGCACACCCAGAGGAGAAGTGCTAAAATCTCCTTTTGGCGTAGTTTCTCGTGTCGAAGGGAAGTCACAAGGAAACACTATGAGAGACTTGGGTGATCAAGGTGAAGGAAAACCTATTCACAAGATGATAACTTCTAAGGCTGAAACATGGATTCAAAAGAAAACATCATCATGGCCTTGGAGAACAAATGATCAGGAAGGATCTGAGGCTAGGGATGTTCGTGCTGCTTGGCCTTGGTTGCAGTCACAGGGTGATCAAGAGAACGAGTCAATTAATCAGAAGAATCTTTCTTCTGGGTTGAAGCAAGAAAGTCAGGCCGGTGAAAGTAATCGTCCTCTTAACAGTGAGGCTTCAGGATCCTGGTCCTCCTTTATTAATGTTAACAGCACAAGTAGTACCAGCAGCTGTGGGAGTGGCAACAGTTATGCTGCCAATAATAAAGTGGATGTTGACTCTGATTGCTTGGATTATGAAATTTCGTGGGAGGATCTGACAATTGGAGAACCAATTGGACAAGGTAGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCGGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAATACTCAGATGATGTGATACTATCTTTCAGACAAGAGGTGTCTCTCATGAAAAGACTTCGTCATCCAAATGTTATTCTCTTTATGGGGGCTGTGACTTCACCTCAACATCTATGCATTGTAACAGAGTTTCTCCCACGGGGAAGCTTGTTTCGTTTGCTTCAGAGAAACACATCCAAACTTGAGTGGAGACGGCGAATTCATATGGCCTTAGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCCCCAATCATCCATCGAGATTTGAAGTCTTCAAATATTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCGCGTCTTAAGCATGAAACATATCTCACTACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACTGTCAGATGAGAAGTCTGATGTTTACAGCTTTGGGGTGTTATTGTGGGAACTTGCAACTGAAAAGATCCCTTGGGATACTCTCAACCCAATGCAGGTTATTGGAGCTGTAGGGTTTATGAACCATCGGTTAGAAATTCCAGAAGATGTTGATCCGCAGTGGGCTTCTATAATTGAGAGCTGCTGGCACAGTGATCCTGCTTGCCGACCAACATTTCAAGAACTGGTGGAAAGGCTTAGAGAACTGCAGAGACAATATGCAGTTCAATTCCATGCAGCTCGATCTGCTGTCGATGAAAGCACTCAAAAGGAGTTCTAG 2166 0.4349 MGTPQEEEGEEVLKKIERLEAGHAHLKQEMSNLKLLQDNRSRSRLASATCNKPSSSSLHQNDTNYLNILQSMGHSVHVLDLQCRIIYWNPSAENLYGYAAEEVLGRDGIEMLVDHRDFALANDLFNHVKMGESWRGQFPVKNKKGDRFYAVATNTPFYDDDGSLVGVICVSCDSRPFLEATVPFSGGKNAELDSGSNGVRSSISDKLGLDSQQPLQVSLASKISNLASKVSNKVKSRIRTGDNNVIREGGSGGSHHSEHSFSDCALSDQRDDGNSSGASTPRGEVLKSPFGVVSRVEGKSQGNTMRDLGDQGEGKPIHKMITSKAETWIQKKTSSWPWRTNDQEGSEARDVRAAWPWLQSQGDQENESINQKNLSSGLKQESQAGESNRPLNSEASGSWSSFINVNSTSSTSSCGSGNSYAANNKVDVDSDCLDYEISWEDLTIGEPIGQGSSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKRLRHPNVILFMGAVTSPQHLCIVTEFLPRGSLFRLLQRNTSKLEWRRRIHMALDIARGVNYLHHCNPPIIHRDLKSSNILVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNELSDEKSDVYSFGVLLWELATEKIPWDTLNPMQVIGAVGFMNHRLEIPEDVDPQWASIIESCWHSDPACRPTFQELVERLRELQRQYAVQFHAARSAVDESTQKEF 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01768 721 SMART pas_2 63 129 IPR000014 -
Cca08g01768 721 PRINTS Tyrosine kinase catalytic domain signature 556 574 IPR001245 GO:0004672|GO:0006468
Cca08g01768 721 PRINTS Tyrosine kinase catalytic domain signature 622 644 IPR001245 GO:0004672|GO:0006468
Cca08g01768 721 PRINTS Tyrosine kinase catalytic domain signature 603 613 IPR001245 GO:0004672|GO:0006468
Cca08g01768 721 PRINTS Tyrosine kinase catalytic domain signature 666 688 IPR001245 GO:0004672|GO:0006468
Cca08g01768 721 PRINTS Tyrosine kinase catalytic domain signature 517 530 IPR001245 GO:0004672|GO:0006468
Cca08g01768 721 TIGRFAM sensory_box: PAS domain S-box protein 62 170 IPR000014 -
Cca08g01768 721 CDD STKc_MAP3K-like 448 695 - -
Cca08g01768 721 Gene3D PAS domain 74 175 - -
Cca08g01768 721 ProSiteProfiles Protein kinase domain profile. 442 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01768 721 MobiDBLite consensus disorder prediction 330 395 - -
Cca08g01768 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 562 574 IPR008271 GO:0004672|GO:0006468
Cca08g01768 721 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 170 IPR035965 -
Cca08g01768 721 Gene3D Transferase(Phosphotransferase) domain 1 521 720 - -
Cca08g01768 721 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 46 719 - -
Cca08g01768 721 CDD PAS 76 173 IPR000014 -
Cca08g01768 721 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 46 719 - -
Cca08g01768 721 Coils Coil 16 36 - -
Cca08g01768 721 Gene3D Phosphorylase Kinase; domain 1 435 520 - -
Cca08g01768 721 SUPERFAMILY Protein kinase-like (PK-like) 431 695 IPR011009 -
Cca08g01768 721 Pfam Protein tyrosine and serine/threonine kinase 442 695 IPR001245 GO:0004672|GO:0006468
Cca08g01768 721 MobiDBLite consensus disorder prediction 267 282 - -
Cca08g01768 721 SMART serkin_6 442 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01768 721 MobiDBLite consensus disorder prediction 238 316 - -
Cca08g01768 721 MobiDBLite consensus disorder prediction 359 395 - -
Cca08g01768 721 ProSiteProfiles PAS repeat profile. 61 132 IPR000014 -
Cca08g01768 721 Pfam PAS fold 65 170 IPR013767 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01768 Cca-Chr8 49827852 49841873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01768 9 717 MAP Kinase Kinase Kinase AT3G06620 57.477 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Cca08g01768 PK_Tyr_Ser-Thr 8.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01768 - - gmx:100815858 1204.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01768 08 49827852 49841873 Cca08g01768 08 49827852 49841873 ECH
Cca11g02692 11 54332622 54342307 Cca08g01768 08 49827852 49841873 PCT