Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01767 ATGAGGAAGGCAATAGCGCAGTACACGGAAGACGCGAGGCTGCACGCGGTGTTCGAGGAGTCGTCGGGGAGGTCGTTCGACTACTCGCAGTCGGTGAGAATGGCATCGGAGAGGATCCCAGAGCAGCAGATAACGGCGTATTTGCAGAAAATCCAGCGTGGAGGGCTCATCCAGCCCTTCGGCTGCATGCTGGCAGTGGACGAGGCCTCCTTCAGCCTCCTCGCCTACTCCGACAACGCCCGGGACATGCTCGGCATTGCGCCGCACTCGGTACCCTCCCTCGACGACCGCCACCACGCCCTCTCCCTCGGCGCCGACGTACGCGCCCTCTTCACCCCCTCCACCGCCCTCCTCCTCGACAAGGCCTTCTCCGCCCGCGAAATCTCCCTCATGAACCCCCTCTGGATCCACTCCCGCTCCTCCGGGAACCCTTTCTACGCCATCCTCCACCGCGTCGACGTCGGCATCGTCATCGACCTCGAGCCCGCCGCCTTCTCCGACCCCGCCCTCTCCATCGCCGGCGCCGTCCAGTCCCAGAAGCTCGCCGTCCGCGCCATCTCCCAGCTCCAGAGCCTCCCCGGCGGCGACGTCTCCCTCCTCTGCGACACCGTCGTGGAGAGCGTCCGCGAGCTGACCGGGTACGACCGCGTCATGGTTTACAAATTCCACGAGGACGAGCACGGGGAGGTTGTTGCCGAGAGCAAGAGGCCCGATTTGGAGCCTTACATTGGTTTGCATTACCCCGCCACCGATATCCCTCAGGCTTCTAGGTTCCTCTTCAAGCAGAATAGGGTTCGCATGATCGTCGATTGCCACGCTTCCTCTGTCAGAGTCATCCAGGATGAGGCTCTCCTCCAGCCTCTCTGCCTCGTGGGCTCCACCCTGCGTGCCCCTCATGGCTGTCACGCTCAGTACATGGCTAACATGGGTTCCATTGCTTCTCTGGTCATGGCTGTTATCATCAACGGCAACGACGATGAGGCTCTTGCACTTTCCGGAAGGACTTCCATGAGGCTGTGGGGGCTTGTTGTTTGCCATCACACTTCCGCTAGGTCTATTCCTTTTCCCTTGAGGTACGCTTGCGAGTTCCTCATGCAGGCCTTTGGGCTCCAGCTCAATATGGAGCTTCAGTTGGCGGCCCAGTCCTTGGAGAAGCGCGTTTTGAGGACGCAGACTCTGTTGTGTGATATGCTGCTGAGGGATTCCCCTACCGGCATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTCAAATGTGATGGGGCTGCTCTTTACTATCAGGGGAATTACTACCCTCTCGGGGTGACTCCCACGGAGGCTCATATAAGGGATATTATTGAGTGGTTGTTGGCTTTTCATGGAGATTCAACCGGGTTGAGTACTGATAGTTTGGGTGATGCTGGCTATCCTGGGGCTGCTTCGCTTGGCGATGCGGTTTGTGGGATGGCGGTTGCTTATATCACTGAGAAGGATTTTCTTTTCTGGTTCAGGTCGCACACGGCCAAGGAGATCAAGTGGGGTGGTGCTAAGCATCATCCGGAGGACAAGGATGATGGCCAGAGAATGCACCCCCGTTCCTCCTTCAAGGCGTTTCTCGAGGTCGTCAAGAGCCGGAGCTTGCCGTGGGAGAACGCCGAAATGGATGCAATTCACTCTCTGCAGCTTATTCTGCGTGACTCGTTTAGGGATGCTGAGCATAGCAATTCCAAGGCTGTTGTGGATCCCCGGGTGGGGGAACTGGAGTTGCAAGGGGTGGATGAACTGAGTTCTGTGGCCAGAGAGATGGTTAGGTTGATCGAAACGGCCACTGCTCCTATATTTGCTGTTGATGTGGATGGACACGTGAATGGATGGAATGCAAAGGTTTCCGAATTGACAGGACTCCCGGTTGAGGAGGCTATGGGGAAGTCCTTGGTTCGCGATCTTGTGTTTAAGGAGTCCGAAGAAACTGTCGAAAAGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACGTTTGGCCCAGAACATCAAAATAAGGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAATTGTGATGGACAAATTCATCAACATACAAGGCGACTACAAGGCTATCATACACAGTCCAAATCCTTTGATCCCTCCCATTTTTGCATCGGACGATAACACGTGTTGTTTAGAGTGGAACACTGCGATGGAAAAACTTACTGGTTGGGGCCGTGTGGATGTCATTGGAAAAATGTTGGTGGGAGAGGTTTTTGGGAATTGCTGTCAGTTGAAGGGTCCAGATTCAGTAACAAAGTTCATGATTGTCTTGCACAATGCGCTTGGCGGACAAGACACTGATAAATTCCCTTTTTCATTTCTTGATCGGCATGGAAAGTACATACAAACTTTCCTCACTGCAAATAAGAGGGTCAACATGGATGGTCAGATCATTGGGGCTTTTTGCTTTTTGCAAATTGTGAGTCCGGAACTTCAACAGGCTCTAAAGTCACAGAGACAACAAGAAAAAAATACCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGGAGTAAAGAACCCTCTGAGTGGCATACGCTTTACTAACTCTCTTTTGGAGGCTACAGGCTTGTCCGATGAGCAAAAGCAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAAGATAATACGAGACGTTGATCTTGAACGCATTGAGGATGGGTCCCTGGAGCTTGAAAAGGGGGAATTCTTGCTTGGAAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTACTGTTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAATTGAGGATTCAGCAAGTGTTGGCTGATTTCTTATTGAATATAGTGCGCTATGCACCATCTCCAGATGGCTGGGTAGAGATTCATGTACACCCAAGAATAAAACAAATTTCGGATGGGCTTACTCTTCTCCATGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTCTTTCTCCTGAATTGATTCAAGACATGTTCAATAGCAGTCGGTGGGTGACTCAAGAAGGAAAAACCCTAAAAGTGTTAAATAGATTATGCTCACCTAACAAGGCAACTTAA 3216 0.5072 MRKAIAQYTEDARLHAVFEESSGRSFDYSQSVRMASERIPEQQITAYLQKIQRGGLIQPFGCMLAVDEASFSLLAYSDNARDMLGIAPHSVPSLDDRHHALSLGADVRALFTPSTALLLDKAFSAREISLMNPLWIHSRSSGNPFYAILHRVDVGIVIDLEPAAFSDPALSIAGAVQSQKLAVRAISQLQSLPGGDVSLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASSVRVIQDEALLQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDDEALALSGRTSMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYYPLGVTPTEAHIRDIIEWLLAFHGDSTGLSTDSLGDAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEHSNSKAVVDPRVGELELQGVDELSSVAREMVRLIETATAPIFAVDVDGHVNGWNAKVSELTGLPVEEAMGKSLVRDLVFKESEETVEKLLSRALKGEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIIHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRVDVIGKMLVGEVFGNCCQLKGPDSVTKFMIVLHNALGGQDTDKFPFSFLDRHGKYIQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALKSQRQQEKNTFARMKELAYICQGVKNPLSGIRFTNSLLEATGLSDEQKQFLETSAACEKQMLKIIRDVDLERIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNIVRYAPSPDGWVEIHVHPRIKQISDGLTLLHAEFRMVCPGEGLSPELIQDMFNSSRWVTQEGKTLKVLNRLCSPNKAT 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01767 1071 CDD PAS 736 844 IPR000014 -
Cca08g01767 1071 Gene3D - 381 554 IPR043150 -
Cca08g01767 1071 PRINTS Phytochrome signature 111 133 IPR001294 GO:0006355|GO:0009584
Cca08g01767 1071 PRINTS Phytochrome signature 613 628 IPR001294 GO:0006355|GO:0009584
Cca08g01767 1071 PRINTS Phytochrome signature 491 510 IPR001294 GO:0006355|GO:0009584
Cca08g01767 1071 PRINTS Phytochrome signature 296 317 IPR001294 GO:0006355|GO:0009584
Cca08g01767 1071 PRINTS Phytochrome signature 524 542 IPR001294 GO:0006355|GO:0009584
Cca08g01767 1071 PRINTS Phytochrome signature 707 727 IPR001294 GO:0006355|GO:0009584
Cca08g01767 1071 PRINTS Phytochrome signature 406 426 IPR001294 GO:0006355|GO:0009584
Cca08g01767 1071 PRINTS Phytochrome signature 594 610 IPR001294 GO:0006355|GO:0009584
Cca08g01767 1071 PRINTS Phytochrome signature 687 704 IPR001294 GO:0006355|GO:0009584
Cca08g01767 1071 PRINTS Phytochrome signature 211 230 IPR001294 GO:0006355|GO:0009584
Cca08g01767 1071 SUPERFAMILY PYP-like sensor domain (PAS domain) 596 705 IPR035965 -
Cca08g01767 1071 Gene3D PAS domain 586 719 - -
Cca08g01767 1071 Gene3D PAS domain 50 299 - -
Cca08g01767 1071 SUPERFAMILY GAF domain-like 176 373 - -
Cca08g01767 1071 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 923 1048 IPR036890 -
Cca08g01767 1071 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 1065 - -
Cca08g01767 1071 PANTHER PHYTOCHROME 2 1065 - -
Cca08g01767 1071 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 196 366 IPR016132 -
Cca08g01767 1071 SMART gaf_1 196 386 IPR003018 GO:0005515
Cca08g01767 1071 Pfam PAS fold 46 163 IPR013654 GO:0006355
Cca08g01767 1071 SUPERFAMILY PYP-like sensor domain (PAS domain) 739 842 IPR035965 -
Cca08g01767 1071 Gene3D - 177 537 IPR029016 -
Cca08g01767 1071 Pfam GAF domain 196 376 IPR003018 GO:0005515
Cca08g01767 1071 Gene3D - 930 1057 IPR036890 -
Cca08g01767 1071 CDD PAS 602 709 IPR000014 -
Cca08g01767 1071 ProSitePatterns Phytochrome chromophore attachment site signature. 296 305 IPR013516 -
Cca08g01767 1071 Pfam Phytochrome region 389 562 IPR013515 GO:0006355|GO:0009584
Cca08g01767 1071 SMART HisKA_10 866 930 IPR003661 GO:0000155|GO:0007165
Cca08g01767 1071 CDD HisKA 866 922 IPR003661 GO:0000155|GO:0007165
Cca08g01767 1071 SMART pas_2 593 660 IPR000014 -
Cca08g01767 1071 SMART pas_2 724 794 IPR000014 -
Cca08g01767 1071 SUPERFAMILY GAF domain-like 384 561 - -
Cca08g01767 1071 ProSiteProfiles Histidine kinase domain profile. 873 1071 IPR005467 -
Cca08g01767 1071 Gene3D PAS domain 738 848 - -
Cca08g01767 1071 ProSiteProfiles PAS repeat profile. 725 803 IPR000014 -
Cca08g01767 1071 Pfam PAS fold 594 709 IPR013767 GO:0006355
Cca08g01767 1071 Pfam PAS fold 725 844 IPR013767 GO:0006355
Cca08g01767 1071 SUPERFAMILY PYP-like sensor domain (PAS domain) 50 163 IPR035965 -
Cca08g01767 1071 TIGRFAM sensory_box: PAS domain S-box protein 598 713 IPR000014 -
Cca08g01767 1071 Gene3D - 849 929 - -
Cca08g01767 1071 Pfam His Kinase A (phospho-acceptor) domain 870 930 IPR003661 GO:0000155|GO:0007165
Cca08g01767 1071 ProSiteProfiles PAS repeat profile. 591 662 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01767 Cca-Chr8 49819564 49825098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01767 1 1040 Histidine Kinase Gene Family AT2G18790 75.380 0.0 1674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01767 K12121 - gmx:100799831 1952.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01767 08 49819564 49825098 Cca08g01767 08 49819564 49825098 ECH