Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01755 ATGGAAGACTTGTACCATGTCAGTTTCAGTACAGTTGATGACAATTCTAGTTCATCCAGCGATATTTTCTGGGAGGGATTGAATGATGTGAAAAAGGTTCAATTTTCTGGAGCAGAAGATCAAGGAGAGAACGGGGGAATTGACTCACTTTACTCTGATTTTGGGTTCTTCCAATATGATCCATCAGAAGAAGGATATCTTGTATCCACTAATCAACAAAAGTATCAGCAGCTACCATCATACCATCATTACCATGATTATGGACAATTGGATAACCTTCAATTTGACATGGTCTCTCCACCACTCCAATTTGATGCACAATTTCCGACCATGGCTCCACTCTGTGACTCAACAAAGGACAAGCCTTACTCATCAGCCCCCTTAGCCTCACTTGAGATCTTGAAAAACTATGGCAAGGGCTTCAAGAGGTTGTGCAATGAAGGCCAAACCCTTCAGGCAGTTGATGATTTGGCTATGGCCACAAATGATGTTATTTGGAGAAAGCTCTCAACAGAAGACATCATGAGGATAGCAGGAACAAGCCCCGCTAAGCGAATTGTTCATTATTTTGCTGAAGCACTTCGCCACAGGATAGATAGAGAAACAGGAAGAGTTTCATCCAAGGATTTGCAAAAGGGTCAGTCATTTGATCCTGAAAAGGCGGCCAGGGAACTAAACCCCACTATTGTGGCATTCTATGAGTGGCTTCCCTTTTGTCAAATTGCACTCTTCACTGCAGTGCAAGCTATAATAGAAGATGTAGCTGAAGCAAAGAAGATTCACGTTATAGATCTTGAAATTAGAAAAGGGGGGCACTGGACTATTCTAATGCAAGCACTTGCGTCAAGACAATGTCCAATTGAGCTTCTAAAGATAACCGCTATTGAAACTGGAACCACTAGCCACATAGTTGAGGACACTGGTAAGAGACTAAAGGAGTTTGCTCAAGGTTTGAACATACCCTTCTCTTTCAACATAGTTATGGTATCAGACTTGTTACAGCTAAGAGAAGATCATTTTGAGATTGATCCTGAGGAAGCACTTGCTGTTTATTCTAACTATGCACTTAGATCAAGAATTCAGGATTCAGAACAGCTTGAAACCATTATGAGAGTAATTAGAGCCTTTAGTCCTAATGTAATGGTGGTGACTGAAATTGAGGCGAACCACAACTCTACATCTTTTGTAAACCGTTTCATTGAAGCCCTTTTCTACTTCAGTGCATTCTTTGATTGTCTTGAGGCTTGCATGAAAGAGGATGAGAACAGAACTATTATAGAATCATTATACTTCAGTTATGGAATCAGGAACATTGTGGCTGCAGAAGGTGCTGAAAGAAAGACTCGGAATGTGAAGATTGATGTGTGGAGGGCCTTCTTCTCACGCTTTGGAATG 1395 0.4115 MEDLYHVSFSTVDDNSSSSSDIFWEGLNDVKKVQFSGAEDQGENGGIDSLYSDFGFFQYDPSEEGYLVSTNQQKYQQLPSYHHYHDYGQLDNLQFDMVSPPLQFDAQFPTMAPLCDSTKDKPYSSAPLASLEILKNYGKGFKRLCNEGQTLQAVDDLAMATNDVIWRKLSTEDIMRIAGTSPAKRIVHYFAEALRHRIDRETGRVSSKDLQKGQSFDPEKAARELNPTIVAFYEWLPFCQIALFTAVQAIIEDVAEAKKIHVIDLEIRKGGHWTILMQALASRQCPIELLKITAIETGTTSHIVEDTGKRLKEFAQGLNIPFSFNIVMVSDLLQLREDHFEIDPEEALAVYSNYALRSRIQDSEQLETIMRVIRAFSPNVMVVTEIEANHNSTSFVNRFIEALFYFSAFFDCLEACMKEDENRTIIESLYFSYGIRNIVAAEGAERKTRNVKIDVWRAFFSRFGM 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01755 465 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 36 180 IPR005202 -
Cca08g01755 465 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 175 465 IPR005202 -
Cca08g01755 465 ProSiteProfiles GRAS family profile. 134 465 IPR005202 -
Cca08g01755 465 Pfam GRAS domain family 177 465 IPR005202 -
Cca08g01755 465 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 36 180 - -
Cca08g01755 465 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 175 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01755 Cca-Chr8 49661045 49662655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01755 185 457 GRAS Transcription Factor Family AT3G03450 34.164 3.26e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca08g01755 GRAS 1.3e-74 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01755 - - gmx:100798926 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01755 08 49661045 49662655 Cca08g01755 08 49661045 49662655 ECH