Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01741 atggcttgtttgagagctgcaaaagccgaatctgcaacagcactccattcaaaggcatctttacgcaaaagTCTTTTGTTCAAGGTTGTTGTCGGTGATGCAATAGTCGTTGGTTTTGTGCTTGTGGGTGCAGAGATACATGGCTTTCACACCTTGGAGGATTTGGACGTTAGTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTCTATAATCACAAATATTTCAAGATCCATGCCAAGCCGGTGAATTTGCCCGAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGGAATTTCAGAAAAGATGGGCACAATTGGAAAAAGAAAAGTGATGGGAAAACTGTTAAAGAAGCCCATGAACACTTGAAAGTTGGCAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAAACCAACCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAAGAGTTGCAATTGCAAGGTTCTCCTGTTACACCTGTAAATTCAAATTCAAGTTCTGCCTCTGATCCAGCTGCTTCTTGGATTCCATCAGAAGACTTAGATTCTGGGACAAAAACTGCTTATGCCATTGAGCTTAATGGCAATTCAACAGTCAAAAGTCATGAGCAGAAGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTTCAAATGTTAGCACTTCTACTACATCTAATGAAGGCAATATTCCATCTTCATATCAACAAAATCAAAATTTACTGAATGGAAGCTTTGGCAATATTAAAGAATGCAGCAAGGTCAACCAATCTTTGTGCATTGGAAATGGAAACTCCCTTGAAACAGCCTTGAGCAGAATGCCAAAGTCCAATAACACCAACCTATTCAAAGCTAATCTAGGGCTAGAAGGCAATTCAGGCATTCTGTTCCAACCAGACATACCAAAGAGCAAGCTGCACACAGCCAAAAAAAAGTTTCATCCCTTGTTGTTGTCAGCTCTCGAAGCACCAATTTCTTCATCTGTTCATGAACCATATTTGTCACTGGAGGCTGATAATCAGCAACATGCTCTGCCAGAACAAGTATTTAATCTCACTGAGGTGTCCCCTGCATGGGCATCTTCCACAGAGAAAACAAAGATCTTGGTGACTGGATATTTTCATAATAACTATCAACACCTTGCAAAGTCCAACCTACTGTGTGTCTGTGGTGATGTAAGTGTTCCTGTAGAAATTGTTCAGATTGGAGTTTACCGGTGCTGGGTATCACCACATTCTCCTGGATTGGTGAATCTCTATTTGAGCTTCGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCATGATCCAACTGCTGCAATGGAAGACAAATACAACTGGAATAAGTTTCGACTTCAGATAAGGCTTGCTTATTTGCTCTTTGCTACAGATAAAAGCCTTAACATTTTCTCAAGTAAAGTATCACCTAATGCATTGAAACAGGCTAGAAGTTTTTCCTCCAAAACATCTTTTATCTCCAAAAGTTGGCAATATTTTATTAAGTCAATTGATGACCAAACAATTCCATTTTCACAAGTAAAAGATGCCTTGTTTGAGGTTGCGTTGAAAAACAAATTAAAGGAATGGCTTTTGGAACGAATTGTCCTAGGCTACAAGACTTCTGAATATGATGCGCAAGGCCAAGGTGTAATTCATTTGTGCGCAATGCTGGGATATAATTGGGCAATTTCGTTATTTAGTTGGTCAGGCTTGTCACTGGATTTCCGCGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAAT 1892 0.3811 MACLRAAKAESATALHSKASLRKSLLFKVVVGDAIVVGFVLVGAEIHGFHTLEDLDVSNTMEEAKSRWLRPNEIHAILYNHKYFKIHAKPVNLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVGNEERIHVYYAHGQDKPTFVRRCYWLLDKSLEHIVLVHYRETQELQLQGSPVTPVNSNSSSASDPAASWIPSEDLDSGTKTAYAIELNGNSTVKSHEQKLHEINTLEWDDLVVSNVSTSTTSNEGNIPSSYQQNQNLLNGSFGNIKECSKVNQSLCIGNGNSLETALSRMPKSNNTNLFKANLGLEGNSGILFQPDIPKSKLHTAKKKFHPLLLSALEAPISSSVHEPYLSLEADNQQHALPEQVFNLTEVSPAWASSTEKTKILVTGYFHNNYQHLAKSNLLCVCGDVSVPVEIVQIGVYRCWVSPHSPGLVNLYLSFDGHKPISQVVNFEYRTPILHDPTAAMEDKYNWNKFRLQIRLAYLLFATDKSLNIFSSKVSPNALKQARSFSSKTSFISKSWQYFIKSIDDQTIPFSQVKDALFEVALKNKLKEWLLERIVLGYKTSEYDAQGQGVIHLCAMLGYNWAISLFSWSGLSLDFRDKFGWTALHWAAYYG 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01741 630 Gene3D - 544 630 IPR036770 -
Cca08g01741 630 ProSiteProfiles CG-1 DNA-binding domain profile. 57 183 IPR005559 GO:0003677
Cca08g01741 630 Pfam CG-1 domain 63 176 IPR005559 GO:0003677
Cca08g01741 630 SMART CG_1_2 61 178 IPR005559 GO:0003677
Cca08g01741 630 MobiDBLite consensus disorder prediction 185 202 - -
Cca08g01741 630 Gene3D Immunoglobulins 377 472 IPR013783 -
Cca08g01741 630 MobiDBLite consensus disorder prediction 185 208 - -
Cca08g01741 630 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 46 282 - -
Cca08g01741 630 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 46 282 - -
Cca08g01741 630 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 350 630 - -
Cca08g01741 630 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 350 630 - -
Cca08g01741 630 SUPERFAMILY Ankyrin repeat 560 630 IPR036770 -
Cca08g01741 630 SUPERFAMILY E set domains 382 469 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01741 Cca-Chr8 49394795 49405996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01741 41 630 CAMTA Transcription Factor Family AT4G16150 51.373 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01741 K21596 - gmx:100776839 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01741 08 49394795 49405996 Cca08g01741 08 49394795 49405996 ECH
Cca11g02717 11 54523940 54532367 Cca08g01741 08 49394795 49405996 PCT