Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01735 ATGAGTGCATCAGAAAACCCTATAGATGAGAGCATTGAGGGTAAAGCTTCTTCTTCCAGAACGTTAAAGCTGTTCGGTATCCCACTAACCCCACCTGACTATGACTATGAAGTCGACATTAAGAGATTCAAATGCCATTTCTGCTTCCGCGAATTCGCCAATTCTCAAGCGCTGGGTGGCCACCAAAACGCGCACAAGAGAGAACGCAAAAAAACAGCACTTTCACCCTTCGGAACCTATCGCCATAACCAACGCTTCACACCACCTTCACCTAACGCCATCATGCTTCCGCACGGTGGATCGGGACCGTTGGTTTGTCCACGTGGACCTTGGCTATCGTGGGACGACGCTCATCATGGGGTTAGATTTGTGAGACCAATGgatggtaatgataatggtgatgataatggtagtgatgatgttgatCTTAACTTGAGTTTGGCTAACACATCTTCCAAATTCAGGGACAAAGAATTAGTCAGGTGGAGGAGAACTTGA 498 0.4357 MSASENPIDESIEGKASSSRTLKLFGIPLTPPDYDYEVDIKRFKCHFCFREFANSQALGGHQNAHKRERKKTALSPFGTYRHNQRFTPPSPNAIMLPHGGSGPLVCPRGPWLSWDDAHHGVRFVRPMDGNDNGDDNGSDDVDLNLSLANTSSKFRDKELVRWRRT 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01735 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Cca08g01735 165 PANTHER ZINC FINGER PROTEIN 5 12 149 IPR044299 GO:0010090
Cca08g01735 165 SUPERFAMILY beta-beta-alpha zinc fingers 41 70 IPR036236 -
Cca08g01735 165 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Cca08g01735 165 PANTHER ZINC FINGER PROTEIN 8-LIKE 12 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01735 Cca-Chr8 49285191 49285688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01735 41 72 C2H2 Transcription Factor Family AT5G06650 81.250 3.77e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01735 - - ccaj:109814970 329.717