Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01734 ATGTCAGAAGGAACCAGTCTGGTGTTGGAGTCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGGACCATTGAGGAAACACCAGAGGAAACAATTTTGTCAAGACAAACTTCTGTCAACCTCGTCCCTTTTATTGGTCAGAGATTTGTTTCTCAGGAAGCAGCCTATGAATTTTATTGCAGTTTTGCTAAACAATGTGGCTTTTCAATTAGACGGCACCGAACTCGGGGGAAAGATGGGGTTGGCCGGGGAGTTACAAGGAGGGATTTTACTTGCCATCGTGGTGGATATCCCCAGATTAAACCTTCTGATGATGGGAAGGCGCAAAGGAACCGGAAATCATCACGCTGTGGTTGCCAAGCATACATGCGCATTGTGAAAAGAGCAGATTTTGATGTCTCTGAATGGCGTGTTACTGGTTTTAGGAACATTCACAATCATGAGTTGTTAAAGTCCAATGAGGTGCGACTTCTTCCAGCATATTGTCCTATATCTCCTGATGACAAGAGTCGTATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAAATGCTAAGATTGATGGAGCTAGAGAAAGGTGTCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTAAGAAACCTGTTGCAATCTTTCAGAAATGTGGATAGAGATAATGATGCTATTGATTTGATTGCTATGTGCAAGAGGTTAAAGGATGAAAACCAAAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAGCATATCGCATGGTCCTACAGCTCCTCCATTCAATCATATGAGGCATTTGGAGATGCTGTGGTTTTTGACACAACCTACCGAGTAGATGCCTATGACATGCTGTTGGGAATTTGGCTTGGTGTGGACAATAATGGAATGACTTGTTTCTTTAGTTGTGCACTTCTACGGGATGAAAATATGCAGTCTTTTTCATGGGCTCTAAAGGCTTTCTTGAGCTTCATGAAAGGAAAGGCTCCACAAACAATATTAACAGACCATAACATGTGGCTGAAAGAGACCATTGCTGTTGAATTGCCTGAAACTAAGCATGCCTTTTGTATATGGCATATTCTTTCTAAGTTCTCTGTTTGGTTTTCTTTACTTCTTGGATCACAATATGATGAGTGGAAATCTCAGTTCCATCGCCTCTACAATTTGGAATTGGTAGAGGATTTTGAAGAAGGCTGGAGGCAAATGGTTGATAAATATGGACTCCACGCAAATAAACATATTATTAGCCTATATTCGTTAAGGACATTTTGGGCTTTACCATTCTTGAGGCGTTACTTCTTTGCAGGATTGACCAGTACATGTCAGTCTGAGTCCATTAATGTTTTCATCCAACGGTTCTTGAGTGCACAGTCTCAACTAGAACGTTTTGTGGATCAAGTGGCAGATATTGTTGATTTTAATGACCGAGCTGGGGCAAAACAAAAGATGCAAAGGAAACTTCAGAAAGTGTGTCTAAAAACAGACACCACTCCCAGTCAGATGGAGGGTGCAAAGTGTTTTGGGTTCCTTGTCAAGAGCACATCAGCTGCAGCTGCCATCTATCGTTGGCGAGGCAATAGTTCATCTTCTGTTAATCACTTTCGGGGTGCAACTAGTAGGGATCCGCCTGAAAGGATGCAATTTTTGGAATCCATGGTTTCAACTTTTTTAGTGGAATCCATTGAAACTGAGGAACGGCTGGATGTTGCTTGCGACCAAATTTCCATGGTGCTATCACGCATCAAAACCCTTCCTAGGTCCACACATGGGGTGAATGACATAACATATAGTTATCCATCAGATTCACTGATATTGCCAGAGGTAGAAGATACTGATGGAATGATTCATGGCTTTACAATCACAAATCCCCATGATTCTATCACTGCAGGAAACCTAAAGGAGAGAAGGGTGAGAGATGGAGTCGATCTCACTAGGAAGCGTAGGCAATTCTCAGCGCCGTTGTGTGCTCAATATGGCCATGATGCATCTGATTGCTCAATAATGGCGGGTGACAATATGAGTGGAGATGCATTAGGCGATACACATGTTGCCGCCCGCTCTTTACACGAGCAAAAGGAATTGCAGACATTCGTTGCTTTTTGGAGCTTCTGCCTACGTTCTTGGCGGCTGAGGCCTTATGAGACCTCAAGAGGGCTCTCCTGGCTAGTTCTTTCCCCATATTGGATTTGGTTGTGCCATTTATGGGAGGGATCTCTTGGGAAGAGTTTCCTTGGCTGTTGCCAGCATCAAAAGAGACATTCTCAGAAGCCATTAAGATGTCTTGAAGAAGGGTAG 2310 0.4264 MSEGTSLVLESSENGTDLSQDDIGTIEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSDDGKAQRNRKSSRCGCQAYMRIVKRADFDVSEWRVTGFRNIHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKRLKDENQNFKYEFKIDSNNRLEHIAWSYSSSIQSYEAFGDAVVFDTTYRVDAYDMLLGIWLGVDNNGMTCFFSCALLRDENMQSFSWALKAFLSFMKGKAPQTILTDHNMWLKETIAVELPETKHAFCIWHILSKFSVWFSLLLGSQYDEWKSQFHRLYNLELVEDFEEGWRQMVDKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSTCQSESINVFIQRFLSAQSQLERFVDQVADIVDFNDRAGAKQKMQRKLQKVCLKTDTTPSQMEGAKCFGFLVKSTSAAAAIYRWRGNSSSSVNHFRGATSRDPPERMQFLESMVSTFLVESIETEERLDVACDQISMVLSRIKTLPRSTHGVNDITYSYPSDSLILPEVEDTDGMIHGFTITNPHDSITAGNLKERRVRDGVDLTRKRRQFSAPLCAQYGHDASDCSIMAGDNMSGDALGDTHVAARSLHEQKELQTFVAFWSFCLRSWRLRPYETSRGLSWLVLSPYWIWLCHLWEGSLGKSFLGCCQHQKRHSQKPLRCLEEG 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01734 769 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Cca08g01734 769 Pfam MULE transposase domain 275 367 IPR018289 -
Cca08g01734 769 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 526 666 - -
Cca08g01734 769 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 498 - -
Cca08g01734 769 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 526 666 IPR031052 GO:0006355
Cca08g01734 769 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 498 IPR031052 GO:0006355
Cca08g01734 769 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01734 Cca-Chr8 49258872 49262996 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca08g01734 MULE 6.5e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01734 - - gmx:100778434 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01734 08 49258872 49262996 Cca08g01734 08 49258872 49262996 ECH