Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01731 ATGGCCTCACACGTCCGCAGCTTCTGCTGTTTCTTCACCTTGGCCGTGGCCGTGCTGTCCATCTTCTCCGCCACGCCGTCCACGTCTCAGCCGCAAGCCGCCGACTCCTGCAACGGAATATTCCTCTCGTACGCCTACACCGGCGGGAGGAAGCTAGCGCCGAACGTGACGGAGCCGGCGGAGCAGCCGTACAGGTTCGAGTCGACGCTGAGGGTGCTGAACAACGGGCTAGAGGAGCTGAAGGATTGGAGGGTGTACGTGGGGTTTAGGCACCGCGAGTGGTTGGTGTCGGCGTCGAACGCGGTGCTGGCCGACGGCGCCAGCCTTCCCGCTGCAGTGGGGAACGGCACCGTTTTGAGCGGCTCCACGGTGAGGGATCTGAAGACGGCGGTGGAGACTGCCGGGGACTTGAGTCAGATGCAGGTAACGGTGGAGATTGTGGGGGCTTTGTTTGGAGTGGCGCCACCCGCTGTGCCCATGCCTTCTTCTATAAACTTGGCTAACGATGGATTTGTGTGTGGTCAACCCACTAGTCAAGGGAGCAATGAGACTCACGTCTGTTGCACAAGTGATCCCAATTTCAAATCAAACATCTCCACACTCGAAGAGTTCCAACCCCGTCAGAAGGGTGACCTCAGCATCACCTACGACGTCATCAGAACCTATGATTCCAATTACTGGGCAGAGGTCACAATCGCAAACCACAACCCCTTAGGCCGTCTGGATAACTGGCAACTAACCTGGGACTGGAACAACGACGAGTTCATCTATGCAATGAAAGGTGCTTATCCCTCCAACGTTGACTCCTCCGAATGTGTCTTTGGTTCACAGGGTGTGTTCTACAAGGAACTCGACTTCGCCAACGTCTTGAACTGCGAAAGAAGACCAACCATAGTGGATCTCCCTCCATCTAGCTTCAACGACACAAACATTGGTCAAATCCCGTTTTGCTGCAGGAATGGCACCATCTTGCCACCAACTATGGACCCTAGCATGTCATCTTCGAGATTCCAAATGCAAGTTTTCAAAATGCCGCCGAACCTTAACCTTTCCCACCTCACACCTCCTCGTAACTGGGAGATAAAGGGTACCCTCAACCCTGATTACAAATGTGGCACCCCTATTAGAGTCACTCCTAGTGAATCTCCCGACCTAACACACCCTCCTTCCAACAAATCCGCTATTGCAAGTTGGCAAGTTGTGTGCAACATCACCAACACAAACCGTGCCAACAAGTGTTGTGTTTCCTTTTCAGCTTACTACAACGAGTCGGTTATCCCATGCAACACGTGTGCATGTGGATGCAACAACAACAACGTGGAGAGGACATGCAGTGTTACTTCACCAGCCATGTTGCTTCCACCGGAGGCACAACTTGTCCCCTTTGAGAACCGAACCGAGAAGGCTGTGACCTGGGCTGGGTTGAAGCACTTGCACGTGCCCAACCCCATGCCTTGCGGTGACAACTGTGGCGTGAGCATAAACTGGCACGTGTCGACGGATTACCGTAGAGGCTGGACCGCGAGGGTGACGCTTTTCAACTGGGGTGAGACTAGTTTTGCTGACTGGTTCGTTGCGGTGGAAATGGAGAAGGCTGCGAAGGGTTTTGAGAAGGTGTATTCGTTCAATGGAAGTGCGTTGGAGAGTGTGGAAAACACGATATTCATGCAGGGGAAGGAGGGGTTGAACTATCTTGTGGCGGAAACGGATGGATCTAACCCTCGGAGAGATCCTAGGGTGCCGGGGAAGCAGCAATCAGTGATATCGTTTACGAAGAAAGCTACTCCAGGAATTGATGTGGTTGGTGGTGATGGGTTTCCTAGTAAAGTGATCTTCAATGGGGAGGAGTGCTCTCTTCCTTTGGTGTTTCCTAGCAGTGGTGGGAGAAAGGAGGTTTCGTTGAGCACTATGATGTTCCTGGTGCTGTTGTTTTCGGTTTTCTTCGTGTGGCAATAG 1956 0.5302 MASHVRSFCCFFTLAVAVLSIFSATPSTSQPQAADSCNGIFLSYAYTGGRKLAPNVTEPAEQPYRFESTLRVLNNGLEELKDWRVYVGFRHREWLVSASNAVLADGASLPAAVGNGTVLSGSTVRDLKTAVETAGDLSQMQVTVEIVGALFGVAPPAVPMPSSINLANDGFVCGQPTSQGSNETHVCCTSDPNFKSNISTLEEFQPRQKGDLSITYDVIRTYDSNYWAEVTIANHNPLGRLDNWQLTWDWNNDEFIYAMKGAYPSNVDSSECVFGSQGVFYKELDFANVLNCERRPTIVDLPPSSFNDTNIGQIPFCCRNGTILPPTMDPSMSSSRFQMQVFKMPPNLNLSHLTPPRNWEIKGTLNPDYKCGTPIRVTPSESPDLTHPPSNKSAIASWQVVCNITNTNRANKCCVSFSAYYNESVIPCNTCACGCNNNNVERTCSVTSPAMLLPPEAQLVPFENRTEKAVTWAGLKHLHVPNPMPCGDNCGVSINWHVSTDYRRGWTARVTLFNWGETSFADWFVAVEMEKAAKGFEKVYSFNGSALESVENTIFMQGKEGLNYLVAETDGSNPRRDPRVPGKQQSVISFTKKATPGIDVVGGDGFPSKVIFNGEECSLPLVFPSSGGRKEVSLSTMMFLVLLFSVFFVWQ 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01731 651 PANTHER COBRA-LIKE PROTEIN 7 1 648 - -
Cca08g01731 651 SUPERFAMILY Carbohydrate-binding domain 208 257 IPR008965 GO:0030246
Cca08g01731 651 Pfam COBRA-like protein 226 405 IPR006918 GO:0010215|GO:0031225
Cca08g01731 651 PANTHER COBRA-LIKE PROTEIN 7 1 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01731 Cca-Chr8 49233356 49236317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01731 37 634 COBRA Gene Family AT4G16120 64.511 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01731 - - gmx:100778971 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01731 08 49233356 49236317 Cca08g01731 08 49233356 49236317 ECH
Cca11g02730 11 54671060 54673789 Cca08g01731 08 49233356 49236317 PCT