Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01730 ATGAATCTTAGCAACGGCAAGGGATCCACTTCGAGTTCTGTCAAAACTGGCGACACCATCTCCGACCAGTTTCCGGCGGGTCTCCGGGTGCTTGTGGTGGATGATGACCCCACTTGTCTTATGATCCTTGAGAGGATGCTGCGTGCTTGTCTCTATGAAGTGACAAAATGCAAGCGAGCTGAGGTTGCATTGTCGCTTTTGAGAGAGAACAAGAATGGGTTTGATATTGTTCTTAGCGATGTCCATATGCCAGATATGGATGGATTTAAACTTTTGGAGCTTATTGGGTTGGAGATGGACCTTCCCGTTATAATGATGTCAGCTGATGATGGAAAAAGTGTTGTGATGAAAGGGGTGACTCATGGTGCTTGTGATTACCTGATTAAGCCAGTGCGTATTGAGGCTTTGAAGAATATATGGCAGCATGTGATTCGGAAGAGAAAGAATGGGGCAAAAGATGTGGAGCAATCGGGTAGTGTGGAAGAAGGAGATCGGCTTCAGAAGGGATCTGAAGATGGAGATTACTCATCCTCGGTGAATGAGGGGAAAAGCTCAAAGAAAAGGAGGGATGAGGAGGATGAAGGAGAGGAGAGGGATGATTCCTCCACGTTGAAGAAACCGCGGGTTGTTTGGTCTGTTGAGCTTCATCAGCAGTTCATGGCTGCTGTGAATCAACTTGGAATTGAAAAAGCTGTTCCTAAAAGGATTTTGGAATTGATGAATGTTCCTGGGCTCACCAGAGAAAATGTTGCCAGCCATCTCCAGAAATACCGTTTGTATCTTAGAAGGCTGAGTGGAGTTTCACATCAGCAGAGTAGCTTGAACAACTCCTTCATGAGCTCACAAGAAGCATCATTTGGGGCAACTTCAATCAGCGGAATTGATCTTCAAGCATTTTCGGCTGCCAGCCAGCTCCAGTCACAAAGTCTGGCCAAGCTTCAAGCCGCAGGGCTTGGCAGGTCAACTGCTAAACCAGGTGTGCCTATGCCTCTATCTGACCAAAAGAACCTTTTCAGTTTTGAGAGCCCAAGATTACGATTTGGAGAAGGGCAAATGCAACATTTAAGCAACAATAAACCAATGAACTTGCTTCATGGAATTCCTACCAACATGGAGCCAAAACAACTTGTCAATTTGCACCAATCTTCTCAATCCCTTGGTAACTTGAATATGCGACTCAATGCTCCTGCTGCACAGAACAACCCCTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGCTAAGTGAAAATGCTGGTTCTCATTTATCCAGGTTTCCATCATCTTTGGTTCAACCTACAGTAACAAATGGTATTTCTAATGGTGTTTTGGGAAATGGAATTGTTGGCAACAGAAACATAACTTCTGCTTATAATTCGGTTCCACAAAACTCTTCATTGTTGAGTTTTCCCATGAGCCAAAGCAATGAAATGTCTGTCAATAGTTTCCCTCTTAGAAGCTCTCCAGGTATAACCAGTATGCCAACAAAAGGCATGTTTCATGAAGATGGTACCTCTGATATTAAAGGAGCCGGTGGATTTGTTCCAAATTATGATATGTTCAACGAATTCAACCATCAGAAGTCCAATGATTGGGACTTAACAAACACAGGCATGACATATGATGCTTCTCAGCATGCAAATCCTTTACAAGGTAACATTGATGTCTTGCCATCAGTTTTAGTCCATCAGGGTTTTCCCTCTATGCAACAAACTGTGCAAAATAGAGATACTACTTCTATTGGAAAAGCTATGTTCTCCACAGGTGAAGGCATGCATCAAGGTAATCTCCAAAACGTTGGTCAACCCCTCAATAACCTTCTTGTTGACAATTCACTAAGGGTTAAGGATGAAAGAATTCCTGATCAAAGCACTCAGATTAATAACATGATGTCCGAGCAATATGGTCAGGAGGATCTTATCAGTGCATTTCTGAAACAGCAAGAAGGCATTGGACCAGTTGAAGATGAGTTTGACTTTGATGGATATTCCTTAGACAACATTTCAACTTAG 2019 0.4314 MNLSNGKGSTSSSVKTGDTISDQFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLELIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNGAKDVEQSGSVEEGDRLQKGSEDGDYSSSVNEGKSSKKRRDEEDEGEERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIEKAVPKRILELMNVPGLTRENVASHLQKYRLYLRRLSGVSHQQSSLNNSFMSSQEASFGATSISGIDLQAFSAASQLQSQSLAKLQAAGLGRSTAKPGVPMPLSDQKNLFSFESPRLRFGEGQMQHLSNNKPMNLLHGIPTNMEPKQLVNLHQSSQSLGNLNMRLNAPAAQNNPLLMQMAQSQPRGQMLSENAGSHLSRFPSSLVQPTVTNGISNGVLGNGIVGNRNITSAYNSVPQNSSLLSFPMSQSNEMSVNSFPLRSSPGITSMPTKGMFHEDGTSDIKGAGGFVPNYDMFNEFNHQKSNDWDLTNTGMTYDASQHANPLQGNIDVLPSVLVHQGFPSMQQTVQNRDTTSIGKAMFSTGEGMHQGNLQNVGQPLNNLLVDNSLRVKDERIPDQSTQINNMMSEQYGQEDLISAFLKQQEGIGPVEDEFDFDGYSLDNIST 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01730 672 SMART REC_2 28 140 IPR001789 GO:0000160
Cca08g01730 672 MobiDBLite consensus disorder prediction 151 203 - -
Cca08g01730 672 MobiDBLite consensus disorder prediction 151 171 - -
Cca08g01730 672 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Cca08g01730 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 642 - -
Cca08g01730 672 Gene3D - 203 265 - -
Cca08g01730 672 ProSiteProfiles Response regulatory domain profile. 29 144 IPR001789 GO:0000160
Cca08g01730 672 SUPERFAMILY CheY-like 27 148 IPR011006 -
Cca08g01730 672 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Cca08g01730 672 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Cca08g01730 672 MobiDBLite consensus disorder prediction 181 203 - -
Cca08g01730 672 Gene3D - 28 161 - -
Cca08g01730 672 CDD REC_typeB_ARR-like 30 144 - -
Cca08g01730 672 Pfam Response regulator receiver domain 30 138 IPR001789 GO:0000160
Cca08g01730 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 642 IPR045279 GO:0009736
Cca08g01730 672 PIRSF RR_ARR_type-B 4 664 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cca08g01730 672 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 262 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01730 Cca-Chr8 49228922 49233138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01730 62 670 Response Regulator Gene Family AT3G16857 48.615 9.43e-169 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca08g01730 Response_reg 2.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01730 - K14491 gmx:100809583 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01730 08 49228922 49233138 Cca08g01730 08 49228922 49233138 ECH
Cca11g02731 11 54678300 54682721 Cca08g01730 08 49228922 49233138 PCT