Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01717 ATGGGACAAGAATCAGATTACAAGACCCAGTTAGTGTTGGAGGTTTGCTCCATTTCCACTCGTTCAATTGTGTGTGTTCATAGACTTGTCTCAAACAATTCTAAGCCACCATTCATAGATTGGTATTGCATTCTTGGTGTGGAAGACAATGCAGGGGTAAACACCATTCGGAAGCAATACCATAAACTTGGTAGGGTTTTACTCATTTTTATGGTTTTATGCTGTATGTGTTTTCTTTTGCATAACAAAGACTGTTATTTCGATGCAGCCTTGCAACTTCATCCAGACAAGAACAAACACCCCAAGTCTGAAATTGCATTCAAGCTTGTCTCTGAGGCATATGTATGTCTATCTGATGCTGCAAAAAGGAAAGCTTTTGACTTCGAAAGACATAAGAAATTCTGCATTGAGTGCAATAGAATTCCATACACAACAAAAAAAGTCCCTCGCAATTCCAATGCTTCAGCTTCAAGTTTGAAGACATGGAACATTACTAGCGTGTCAAGATCACACAAAGTTCGGAGAAATATCAGGGAGATGAGAGAAAGACTGAAGGAGGAGGCCAGGGTGATAGAGAATTGTCTTCATGCAAATTCAATTTCAAAGAAAGAATCTCCCCTCTACAATCCAGCAGATTATAGACATGGGAACAGGTTACATCCTAAAATTGAGAGAGAAATCCCTGTTTTCAATCCAATGAAAAACTTGTACCAAGGTTACCCTCATGTGAGAGACCATGTTTACAAGAATTCTGAAGCATGTTGGTTCTTGCATACACAAAATGTTGTGCACAATGACAAGGGAGAAGCTAAGTGTGCCTCCCCGGTTTTTGAGGTCAGATCAGAAAGGACTATGCTCACAAGTAAATTTGCTTATGTCCCATCATAG 888 0.3964 MGQESDYKTQLVLEVCSISTRSIVCVHRLVSNNSKPPFIDWYCILGVEDNAGVNTIRKQYHKLGRVLLIFMVLCCMCFLLHNKDCYFDAALQLHPDKNKHPKSEIAFKLVSEAYVCLSDAAKRKAFDFERHKKFCIECNRIPYTTKKVPRNSNASASSLKTWNITSVSRSHKVRRNIREMRERLKEEARVIENCLHANSISKKESPLYNPADYRHGNRLHPKIEREIPVFNPMKNLYQGYPHVRDHVYKNSEACWFLHTQNVVHNDKGEAKCASPVFEVRSERTMLTSKFAYVPS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01717 295 SMART dnaj_3 39 122 IPR001623 -
Cca08g01717 295 Pfam DnaJ domain 83 127 IPR001623 -
Cca08g01717 295 PANTHER BNAC03G44070D PROTEIN 86 286 - -
Cca08g01717 295 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cca08g01717 295 PRINTS DnaJ domain signature 42 60 IPR001623 -
Cca08g01717 295 PRINTS DnaJ domain signature 102 122 IPR001623 -
Cca08g01717 295 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 86 286 - -
Cca08g01717 295 ProSiteProfiles dnaJ domain profile. 40 130 IPR001623 -
Cca08g01717 295 SUPERFAMILY Chaperone J-domain 34 65 IPR036869 -
Cca08g01717 295 PANTHER BNAC03G44070D PROTEIN 4 63 - -
Cca08g01717 295 Gene3D DnaJ domain 39 183 IPR036869 -
Cca08g01717 295 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 63 - -
Cca08g01717 295 SUPERFAMILY Chaperone J-domain 83 131 IPR036869 -
Cca08g01717 295 CDD DnaJ 40 119 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01717 Cca-Chr8 49063229 49064520 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01717 - - gmx:100778573 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01717 08 49063229 49064520 Cca08g01717 08 49063229 49064520 ECH
Cca11g02741 11 54792898 54794358 Cca08g01717 08 49063229 49064520 PCT