Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01713 ATGGCGACGGAGAAGTTAATGGCTCCCGGCGGCCCCCGCTACGTTCAAATGAAATCGTCTccgccgccgtcgccgccggccgcggcTGTCGAGGACATGTCCTCGGCCCCGTCGTTCCGCCACAGCTGCGCCGAGGCCCATCGGATTTTCGAAGAACTGCCGCAATCCACCATCGTCTCCGTCTCTCGCCCCGACGCCAGCGACATCAGTCCCATGCAACTCTCTTACACAATTCAAGTTCAGTACAAACAGTTCAAGTGGGAGCTAATGAAGAAAGCTCATCAAGTATTTATTTTGCATTTCGCATTAAAGAAGCGTGCCATTATTGAAGAAATCCACGAGAAGCAAGAGCAGGTTAAAGAATGGCTTCAAAATCTAGGAATTGGAGAACACACTGCTatggtgcaagatgacgatgaagctgatgatgatACTGTCCAGTTACAGACTGATGAAACTCATGAAAGTGCTAAGGACAGAGATGTTCCATCTAGTGCTGCTCTACCAATTATACGGCCAGCCTTAGGAAGACAGCATTCTATTGCAGACAGAGCAAAGCATGCAATGCAAGGATATCTTAATCACTTTTTGGGAAATATCAGTATTGTGAACTCTCGTGAGGTTTGTAAGTTTTTGGAGGTATCAAAGTTATCTTTTTCACCTGAATATGGCCCTAAGCTGAAGGAAGAATATGTGATGGTGAAGCATCTGCCCAAAATTCAGAATGATGATGATTCCAGAAAGTGTTGTTTGTCTGACTGTTTTAGTTGCTGTAACGACAACTGGCAAAAGGTATGGGCTGTACTGAAACCTGGATTCCTGGCATTGCTGGCAGATCCTTTTGATACACAGCCTCTGGACATCATTGTTTTTGATGTATTGCCTGCCTCAGATGGGAATGGGGATGGTCGGTTATCACTGGCGAGTGAAGTGAAGGAACGAAATCCTTTACGCCATTCATTCAAGGTGAGTTGTGGAATCCGGAGTATCAGAATTAGAGTGAAAAGTAGTAGTAAAGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTCAGGCCTCCTGAAGGCTGGTGTCATCCTCATCGTTATGGTTCATTTGCTCCTCCAAGAGGCTTAGTCGAAGATGGAAGTCAAGCCCAGTGGTTTGTTGATGGGCGAGCGGCATTTGAGGCCATTGCTTCTTCAATTGAGGATGCAAAATCAGAGATATTTATATGTGGTTGGTGGCTGTGCCCAGAACTGTATATGCGGAGACCTTTTCACACTAATGCTTCATCAAGGCTTGATAATTTGTTGGAAGCAAAAGCTAAGCAAGGGGTTCAGATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCACATCATGAAAAACTTGTCATTATTGATAACCATATCTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGGTATGACACATCTGAGCATAAAGTGGGAGATTTCCCTCCTCTTGTTTGGCCTGGAAAAGACTATTATAACCCAAGAGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGATCGTGAAAAATTTCCTCGTATGCCTTGGCACGATGTTCATTGTGCCCTTTGGGGACCACCTTGCCGTGACATTGCTAGGCATTTTGTTCAGCGATGGAATTATGCTAAGAGGAACAAAGCTCCGTATGAGCAAGCAATACCATTACTTATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAGGAAGCAGAGAGATACAGATTGAAAGTGGGAGCATTGACAATCATACTATCCTTAAGAGAGATGATTCATTTTGTTCATCTTCCCAAGACCAAGATATTCCTCTACTATTGCCTCAGGAGTCTGATGGATTGGATACTCATGAAGGAGACCAAAAATTGAATGGGGTAATCTCCTCTTCACATCACCTTGACAAGCCAAGAAGGATAAGAAGTGGTCTTCCATTCTCATTCCGGAAGGCCAAAATTGTAGCAGTTGGTCCAGATACACCCATGAAGGGCTTTGTAGATGATCTAGATTCTGAGCATGACCGTGAAAAAAAGTCTGTGGATAGAGTGGCTCATTTTGATTTACAAAGTACAGATTCAGAATGGTGGGAAACACAAGAACGGGGTGACCAGGGAGGTTTTGCTGATGAATCAGGACAAGTTGGTCCTCTTGCTTCCTGCCGTTGCCAAGTTATTAGGAGCGTGAGTCAATGGTCTGCTGGAACAAGTCAAAACGAAGAGAGCATCCACAGTGCTTATTGCTCTCTTATTGAAAAAGCTGAATACTTCATCTACATTGAGAATCAGTTTTTTATCTCAGGTCTTTCTGGAGATGAGATGATACGGAATCGTGTGTTAGAAGCTTTATATCGACGGGTTATGCGAGCTTACAATGACAAAAAATGTTTCAGGGTTATAATTGTCATACCTCTCCTGCCTGGCTTCCAGGGCGGCCTTGATGATAGTGGTGCAGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGCAGAGGGCAAAATTCTATCTTGCATAATCTTTATGAACTTCTTGGTTCTAAAATACATGACTACATCTCTTTTTACGGCCTAAGATCTTATGGTAGACTCTCTAATGGTGGTCCTGTGGCAACCAGCCAGGTGTATGTTCACAGTAAAATCATGGTTGTTGATGATTGTATAACTTTGATAGGATCTGCTAATATTAATGATAGGAGCTTACTTGGCTCCAGAGATTCTGAGATTGGTGTGGTTATAGAAGACAGAGAGTTGATTGGTTCTTATATGGATGGAAAGCCTTGGAAAGCAGGAAAATTTTCCTTGACCCTCCGATTGTCCTTATGGTCTGAGCACTTGGGTCTACCTACAGGAGAGGTCAATCAAATAATGGACCCAGTTGTTGAATCTACTTACAAGGATATTTGGATGGCAACAGCGAAGACGAATACTACTATTTACCAGGATGTCTTTTCTTGCGTACCAAATGATCTGATACACACCAGACTTGCTTTCAGACAAAGTGTGGCTTTTTGGAAAGACAAAATTGGTCAAACGACCATTGATTTAGGAATAGCCCCAGAAAAATTAGAATCATATCATGATGGTGGCATTAAGAACACCGATCCCTTGGATAGATTAGCAGCAGTGAGGGGTCATCTTGTCTCTTTTCCCCTGGAGTTCATGTGTCAGGAAAGTCTAAGACCTGCTTTTAATGAAAGCGAATACTACGCTACTCAAGTTTTCCATTGA 3372 0.4193 MATEKLMAPGGPRYVQMKSSPPPSPPAAAVEDMSSAPSFRHSCAEAHRIFEELPQSTIVSVSRPDASDISPMQLSYTIQVQYKQFKWELMKKAHQVFILHFALKKRAIIEEIHEKQEQVKEWLQNLGIGEHTAMVQDDDEADDDTVQLQTDETHESAKDRDVPSSAALPIIRPALGRQHSIADRAKHAMQGYLNHFLGNISIVNSREVCKFLEVSKLSFSPEYGPKLKEEYVMVKHLPKIQNDDDSRKCCLSDCFSCCNDNWQKVWAVLKPGFLALLADPFDTQPLDIIVFDVLPASDGNGDGRLSLASEVKERNPLRHSFKVSCGIRSIRIRVKSSSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLVEDGSQAQWFVDGRAAFEAIASSIEDAKSEIFICGWWLCPELYMRRPFHTNASSRLDNLLEAKAKQGVQIYILLYKEVALALKINSVYSKKKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIIDNHICFIGGLDLCFGRYDTSEHKVGDFPPLVWPGKDYYNPRESEPNSWEDTMKDELDREKFPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPYEQAIPLLMPQHHMVIPHYLGGSREIQIESGSIDNHTILKRDDSFCSSSQDQDIPLLLPQESDGLDTHEGDQKLNGVISSSHHLDKPRRIRSGLPFSFRKAKIVAVGPDTPMKGFVDDLDSEHDREKKSVDRVAHFDLQSTDSEWWETQERGDQGGFADESGQVGPLASCRCQVIRSVSQWSAGTSQNEESIHSAYCSLIEKAEYFIYIENQFFISGLSGDEMIRNRVLEALYRRVMRAYNDKKCFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGSKIHDYISFYGLRSYGRLSNGGPVATSQVYVHSKIMVVDDCITLIGSANINDRSLLGSRDSEIGVVIEDRELIGSYMDGKPWKAGKFSLTLRLSLWSEHLGLPTGEVNQIMDPVVESTYKDIWMATAKTNTTIYQDVFSCVPNDLIHTRLAFRQSVAFWKDKIGQTTIDLGIAPEKLESYHDGGIKNTDPLDRLAAVRGHLVSFPLEFMCQESLRPAFNESEYYATQVFH 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01713 1123 CDD PH_PLD 203 350 - -
Cca08g01713 1123 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 920 947 IPR001736 GO:0003824
Cca08g01713 1123 Gene3D Endonuclease Chain A 739 980 - -
Cca08g01713 1123 SUPERFAMILY Phospholipase D/nuclease 338 607 - -
Cca08g01713 1123 PANTHER PHOSPHOLIPASE 39 1120 - -
Cca08g01713 1123 Pfam Phospholipase D Active site motif 487 514 IPR001736 GO:0003824
Cca08g01713 1123 MobiDBLite consensus disorder prediction 136 162 - -
Cca08g01713 1123 PANTHER PHOSPHOLIPASE D 39 1120 IPR015679 -
Cca08g01713 1123 Gene3D Endonuclease Chain A 373 608 - -
Cca08g01713 1123 SMART PH_update 226 354 IPR001849 -
Cca08g01713 1123 MobiDBLite consensus disorder prediction 147 161 - -
Cca08g01713 1123 Pfam PLD-like domain 795 967 IPR025202 -
Cca08g01713 1123 SUPERFAMILY Phospholipase D/nuclease 761 970 - -
Cca08g01713 1123 CDD PLDc_vPLD1_2_yPLD_like_2 780 964 - -
Cca08g01713 1123 Gene3D - 256 352 IPR011993 -
Cca08g01713 1123 PIRSF PLD_euk 30 625 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cca08g01713 1123 PIRSF PLD_euk 623 1123 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cca08g01713 1123 MobiDBLite consensus disorder prediction 1 32 - -
Cca08g01713 1123 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 487 514 IPR001736 GO:0003824
Cca08g01713 1123 CDD PLDc_vPLD1_2_yPLD_like_1 380 524 - -
Cca08g01713 1123 SMART pld_4 487 514 IPR001736 GO:0003824
Cca08g01713 1123 SMART pld_4 920 947 IPR001736 GO:0003824
Cca08g01713 1123 Coils Coil 105 125 - -
Cca08g01713 1123 SUPERFAMILY PH domain-like 258 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01713 Cca-Chr8 49012292 49030876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01713 1 1000 Phospholipase D Gene Family (Wang group) AT3G16785 72.637 0.0 1399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01713 K01115 - gmx:100780514 2164.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01713 08 49012292 49030876 Cca08g01713 08 49012292 49030876 ECH