Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01712 ATGTGTGGAGGTGCCATTATTTCAGACTTCATTGGCGTCAAGCGTGGCCGCAACCTCGCCGCGCAGGATCTCTGGTCCGAGCTTGATCCTTTCGCTGACCTCCTTGCCTTCGACACCGCTACCTCCAAACGCCAACCACCACTGCCTAAAATTCAACACAAAAATGAGGTAGCATGTGagaagaagaagaagaaaagCGTGGATGTGGTTGCAGAGAAAGGAAAGAAGAGTGAGCGAGCTCGGAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCTGCGGAAATAAGGGACCCACACAAAGGCGTCCGCGTCTGGCTCGGCACTTTCCCCACCGCCGAAGAAGCCGCCAGAGCCTACGACGCCGCCGCCACTCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCCGCCACTCCGCCGCCGCCCTCCAAGAAACGCTGCCTCGCCCCCGACCACTCCCAACAATCCTCCTccacctccaccaccaccaccaccactaccaccaccaccCCGCCGCCTGACGCCGCCATCCACGGCGGCGACGAGCTCGACCTCAAACAGCTGGAGTGGTTCCTGGGGTTGGAGAATGAGCAGCCTCTGCCCAACGGTGGTGTTGAGTGGaacaacaacgacaacaacaacaactacaTGGTTGACGACCTGTGGATGCTGGACGACGTCGTTATGCCCAACCGTCACCTCGTTTACTAA 726 0.5289 MCGGAIISDFIGVKRGRNLAAQDLWSELDPFADLLAFDTATSKRQPPLPKIQHKNEVACEKKKKKSVDVVAEKGKKSERARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDAAATRIRGDKAKLNFPATPPPPSKKRCLAPDHSQQSSSTSTTTTTTTTTTPPPDAAIHGGDELDLKQLEWFLGLENEQPLPNGGVEWNNNDNNNNYMVDDLWMLDDVVMPNRHLVY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01712 241 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Cca08g01712 241 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Cca08g01712 241 PANTHER EREBP TRANSCRIPTION FACTOR 1 166 - -
Cca08g01712 241 MobiDBLite consensus disorder prediction 135 184 - -
Cca08g01712 241 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Cca08g01712 241 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Cca08g01712 241 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Cca08g01712 241 SUPERFAMILY DNA-binding domain 84 142 IPR016177 GO:0003677
Cca08g01712 241 MobiDBLite consensus disorder prediction 154 178 - -
Cca08g01712 241 CDD AP2 85 143 IPR001471 GO:0003700|GO:0006355
Cca08g01712 241 Gene3D AP2/ERF domain 84 142 IPR036955 GO:0003700|GO:0006355
Cca08g01712 241 PANTHER DNA-BINDING DOMAIN 1 166 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01712 Cca-Chr8 48992425 48994988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01712 1 233 AP2-EREBP Transcription Factor Family AT3G16770 43.774 2.18e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g01712 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01712 K09286 - gmx:100817253 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01712 08 48992425 48994988 Cca08g01712 08 48992425 48994988 ECH