Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01698 ATGGGTGATGAACGTAACAATGGCCAAGATGGACAACAAAGAAGGTTTGCCCTTCTTGGCATCTCTTCAATCCTCCTTGTGGCAATGGTGGCTGCGGTTGGTGTTACCTTAAACCGCGACGGAGAAAGTGATGACGGAGGTCGCATCACGAGTGCTCAAAGGACCAACGTAGACGTACTTTGCCGCTCAACAGAATACCGAGAAACCTGCAAAAAAAGCCTCTCAGGGGAAACCTCAAACGGAACCACAGACACAATGGAACTCATAAAAGCTGCGTTCAACGCCACAGCGGTGGAACTCATAAACCACATTAACAACTCCACCCTTTATCATGAGTTGGCAAAAGACAACATGACAAGACAAGCCATGGATATTTGCAAGGAAGTGTTTGACTATGCTGTTGATGGTATCCACAAATCTGCTGACACAATGGACAGGTTTGATATGAAGAAGTTGGGTGAATATGTTTATGACCTAAAGGTGTGGTTCGCGGGGAGTCTCTCTCACCAACATACATGCTTGGATGGTTTCGCGAACTCGAACACAAAAGCTGGTGATACAATGCTCAAGGTTATGAACACCTCGTTGGAGCTTAGTAGCAATGCTTTGGACATGATCAATGTGATATCCAACATACTCAAGGATCTTAACATGAGCACTATTGGCAATAGGAGGCTTCTCTCTGATGATGCAGCAGTTAAGGATGGTTTACCTTCGTGGATGTGTGAAGGGCAAAGACGTCTTCTCCAGGCTGGGTCTGGAGGTAACAAGATTGATGCAATTGTGTCACAAGATGGGTCTGGCCAGTTTAATTCTCTCCAAGAGGCTCTTAAGACTGTTCCCCCTAACAATGCTGAAACTTTTGTGATTCATGTCAAAGCTGGTGTGTACAAGGAATATGTGGATGTGACCAAGCAGATGACCCATGTCACAGTTGTTGGAGATGGTCCTACAAAGACCAAGTTCACTGGCAATTTGAACTTTGTCGATGGCGTGCAAACTTACAAAACTGCTACCTTTGCTGTGAATGGTGCCAACTTCATGGCCAAGGATATTGGATTTGAGAACACAGCAGGGTCCGAGAAACATCAAGCAGTGGCACTTCGAGTAACAGCAGATCAAGCAGTGTTCTACAATTGCCAAATGGACGGTTACCAAGACACCCTTTATGTCCAATCCCAACGCCAATTCTATCGTGATTGCACCGTTAGTGGCACCATCGACTTTGTCTTCGGAGATGCATTTGGAATGTTCCAAAACTGCAAACTAGTGGTGAGAAAGCCCTTAACCAACCAAAAGTGCATGGTGACAGCTGGTGGCAGAACCAAATCTGATAGCCCTAGTGCCCTAGTGTTCCAGAAATGCCACTTCACAGGGGAACCCGAATTGGTTAACATGCAACCCAGGATATCATATCTTGGAAGGCCATGGAAATCATATTCAAAGGTGGTGATCATGGAATCTCAAATTGACAACATCTTTCTGCCAGAAGGGTACATGGCTTGGATGGGAACTCAATTCAAGGAGACATGTGTATATTACGAGTATAACAATAAGGGTCCTTGTGCTGACACATCTATGAGAGTTAAATGGCCAGGTGTTCAGAGCATAACCTCTGGTGAAGCAAATAAATATTACCCTGGAAAGTTCTTCGAACTTGCTAATTCAACTGACCGTGATACTTGGATTATTGATGCTAAGATACCCTACTCTCTTGGTTCTATGGGATCCTAA 1734 0.4481 MGDERNNGQDGQQRRFALLGISSILLVAMVAAVGVTLNRDGESDDGGRITSAQRTNVDVLCRSTEYRETCKKSLSGETSNGTTDTMELIKAAFNATAVELINHINNSTLYHELAKDNMTRQAMDICKEVFDYAVDGIHKSADTMDRFDMKKLGEYVYDLKVWFAGSLSHQHTCLDGFANSNTKAGDTMLKVMNTSLELSSNALDMINVISNILKDLNMSTIGNRRLLSDDAAVKDGLPSWMCEGQRRLLQAGSGGNKIDAIVSQDGSGQFNSLQEALKTVPPNNAETFVIHVKAGVYKEYVDVTKQMTHVTVVGDGPTKTKFTGNLNFVDGVQTYKTATFAVNGANFMAKDIGFENTAGSEKHQAVALRVTADQAVFYNCQMDGYQDTLYVQSQRQFYRDCTVSGTIDFVFGDAFGMFQNCKLVVRKPLTNQKCMVTAGGRTKSDSPSALVFQKCHFTGEPELVNMQPRISYLGRPWKSYSKVVIMESQIDNIFLPEGYMAWMGTQFKETCVYYEYNNKGPCADTSMRVKWPGVQSITSGEANKYYPGKFFELANSTDRDTWIIDAKIPYSLGSMGS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01698 577 Gene3D - 257 575 IPR012334 -
Cca08g01698 577 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Cca08g01698 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 210 IPR035513 -
Cca08g01698 577 Pfam Pectinesterase 259 551 IPR000070 GO:0030599|GO:0042545
Cca08g01698 577 TIGRFAM PME_inhib: pectinesterase inhibitor domain 50 209 IPR006501 GO:0004857
Cca08g01698 577 PANTHER PECTINESTERASE 9 575 - -
Cca08g01698 577 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Cca08g01698 577 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Cca08g01698 577 CDD PMEI-like_3 60 211 - -
Cca08g01698 577 PANTHER PECTINESTERASE 9 575 - -
Cca08g01698 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 211 IPR035513 -
Cca08g01698 577 SMART PMEI_2 52 205 IPR006501 GO:0004857
Cca08g01698 577 SUPERFAMILY Pectin lyase-like 258 551 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01698 Cca-Chr8 48761554 48764439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01698 8 570 Carbohydrate Esterase AT5G49180 45.078 1.21e-179 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01698 K01051 - gmx:100784682 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01698 08 48761554 48764439 Cca08g01698 08 48761554 48764439 ECH
Cca11g02752 11 54891847 54894159 Cca08g01698 08 48761554 48764439 PCT